Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.5e-104 382.1 189 100.0
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.2e-82 310.1 189 80.4
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.3e-80 302.0 182 78.6
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.2e-80 301.6 187 76.5
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.2e-80 301.6 187 76.5
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 4.2e-80 301.6 189 76.7
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.2e-80 300.8 189 76.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.4e-78 296.6 180 77.2
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.0e-78 295.4 185 76.8
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 5.2e-78 294.7 187 73.8
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-77 293.1 188 73.9
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-77 293.1 189 74.1
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.0e-77 292.7 194 75.3
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.6e-77 292.4 189 72.5
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 7.5e-77 290.8 187 72.2
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 9.8e-77 290.4 189 73.5
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.3e-76 290.0 185 73.0
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.3e-76 290.0 185 73.5
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.8e-76 288.9 187 74.3
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.9e-76 288.1 176 76.1
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.9e-76 288.1 174 76.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 4.9e-76 288.1 189 75.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.3e-76 287.7 187 72.7
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.3e-76 287.7 181 72.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.3e-76 287.7 185 74.6
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.3e-76 287.3 185 74.6
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.1e-75 287.0 181 72.4
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-75 287.0 181 72.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-75 287.0 181 72.4
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.4e-75 286.6 181 75.1
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.4e-75 286.6 187 73.8
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.8e-75 286.2 179 76.0
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.8e-75 286.2 185 74.6
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.1e-75 285.4 176 74.4
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.1e-75 285.4 198 70.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 5.4e-75 284.6 179 72.6
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 7.0e-75 284.3 188 71.8
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 7.0e-75 284.3 181 74.0
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 9.2e-75 283.9 180 74.4
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.2e-74 283.5 174 78.2
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.6e-74 283.1 190 74.7
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.5e-74 282.0 180 76.1
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 4.5e-74 281.6 185 71.4
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 5.9e-74 281.2 175 74.3
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.0e-73 280.4 189 72.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.0e-73 280.4 189 72.0
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.3e-73 279.3 187 70.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.3e-73 279.3 185 72.4
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 2.9e-73 278.9 187 71.1
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.9e-73 278.9 189 71.4
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 5.0e-73 278.1 189 67.2
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 6.6e-73 277.7 188 70.2
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 6.6e-73 277.7 188 70.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 6.6e-73 277.7 188 70.2
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.6e-73 277.7 179 73.2
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.6e-73 277.7 179 73.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.1e-72 276.9 179 72.6
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.5e-72 276.6 188 69.7
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 1.5e-72 276.6 185 70.3
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.5e-72 276.6 179 73.2
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.9e-72 276.2 187 68.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.9e-72 276.2 182 70.3
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.5e-72 275.8 181 70.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.5e-72 275.8 162 82.1
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 3.3e-72 275.4 180 73.9
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.3e-72 275.4 185 70.8
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 4.3e-72 275.0 189 72.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.3e-72 275.0 191 68.1
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.6e-72 274.6 187 69.5
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 5.6e-72 274.6 179 74.3
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 5.6e-72 274.6 178 73.0
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 7.3e-72 274.2 162 82.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.3e-72 274.2 186 70.4
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 9.5e-72 273.9 188 69.1
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.5e-72 273.9 190 72.6
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.6e-71 273.1 178 72.5
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-71 272.7 180 71.7
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.1e-71 272.7 190 70.0
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.1e-71 272.7 185 68.6
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.8e-71 272.3 192 67.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 3.6e-71 271.9 183 69.9
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 3.6e-71 271.9 187 70.1
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 4.7e-71 271.6 190 71.1
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 4.7e-71 271.6 188 68.6
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 6.1e-71 271.2 179 71.5
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.1e-71 271.2 181 69.6
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.0e-70 270.4 185 68.1
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.4e-70 270.0 178 70.2
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.3e-70 269.2 190 71.6
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 2.3e-70 269.2 190 71.6
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.1e-70 268.9 180 72.2
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 5.2e-70 268.1 180 72.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 6.8e-70 267.7 175 73.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.8e-70 267.7 175 73.7
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.8e-70 267.7 175 72.0
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 6.8e-70 267.7 180 70.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 8.9e-70 267.3 175 73.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.5e-69 266.5 191 67.5
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.5e-69 266.5 189 68.8
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 3.4e-69 265.4 179 70.4
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.8e-69 264.6 178 70.2
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 9.8e-69 263.8 175 73.7
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 9.8e-69 263.8 179 67.6
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.3e-68 263.5 178 70.2
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 3.7e-68 261.9 183 73.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 4.9e-68 261.5 162 75.3
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 4.9e-68 261.5 200 66.0
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 6.4e-68 261.2 179 68.7
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.3e-68 260.8 187 70.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.3e-68 260.8 188 67.0
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.1e-67 260.4 178 69.1
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-67 260.4 184 69.0
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.4e-67 260.0 193 66.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.2e-67 258.8 180 68.3
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 4.1e-67 258.5 175 69.7
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 4.6e-66 255.0 180 70.0
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 7.8e-66 254.2 168 72.0
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.7e-65 253.1 173 69.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.3e-65 252.7 179 68.2
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.0e-65 252.3 165 72.7
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.0e-65 252.3 165 72.7
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.0e-65 251.5 184 66.8
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 6.6e-65 251.1 274 50.7
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.1e-64 250.4 185 64.9
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 2.5e-64 249.2 164 72.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 3.3e-64 248.8 180 67.2
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 3.3e-64 248.8 172 67.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.3e-64 248.4 178 66.3
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 5.6e-64 248.1 215 58.6
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.0e-62 241.9 164 71.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 5.2e-62 241.5 179 68.7
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.2e-62 241.5 175 65.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 8.9e-62 240.7 189 59.3
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 7.5e-61 237.7 162 73.5
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 7.5e-61 237.7 175 61.7
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 4.9e-60 235.0 161 69.6
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 6.4e-60 234.6 187 59.9
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.0e-57 227.3 137 81.8
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.3e-56 222.2 174 59.8
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.6e-55 218.8 147 72.1
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 9.9e-53 210.7 188 56.4
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.3e-52 210.3 125 76.0
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.2e-52 209.5 133 75.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.4e-52 208.0 131 73.3
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 3.0e-49 199.1 172 59.3
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.9e-48 196.4 214 49.5
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.9e-48 196.4 214 49.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 9.9e-45 184.1 164 59.8
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.6e-42 175.3 109 75.2
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.2e-39 167.2 166 51.2
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 3.6e-31 139.0 116 58.6
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.8e-31 138.7 156 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.9e-20 102.8 101 51.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.4e-20 101.7 109 51.4
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.1e-18 96.7 77 59.7
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.1e-16 90.9 152 36.8
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 6.2e-15 85.1 60 60.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 3.4e-13 79.3 48 66.7
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.2e-10 70.9 49 71.4


User provided reference genes

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