Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 0.0e+00 2004.2 1337 100.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.0e-256 890.2 1346 57.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 6.0e-245 852.0 1334 51.2
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 4.6e-237 825.9 1122 58.0
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 3.7e-210 736.5 1409 53.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 3.0e-204 716.8 1353 49.4
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 5.3e-201 706.1 1425 52.4
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.1e-198 698.4 1182 58.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.8e-196 691.0 1266 55.4
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.7e-192 675.6 726 52.2
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.0e-188 665.2 1368 51.7
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.0e-188 665.2 1368 51.7
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.1e-187 661.8 1362 40.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.4e-184 650.2 1354 41.4
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.7e-183 647.9 1361 49.4
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.5e-182 644.0 767 49.9
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 4.7e-181 639.8 1352 47.0
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.8e-180 637.9 1352 49.3
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 6.7e-180 636.0 1362 48.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.7e-180 636.0 834 48.0
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 3.3e-179 633.6 1364 48.8
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.2e-178 630.9 1354 47.6
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 6.3e-178 629.4 1396 47.5
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.2e-175 620.9 1356 48.7
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 5.2e-172 609.8 1471 48.2
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 8.8e-172 609.0 1363 38.2
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.7e-163 578.9 1465 45.5
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.2e-160 572.0 1394 39.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.1e-153 547.0 1388 37.1
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.6e-151 539.3 1237 41.2
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.3e-148 531.2 646 49.1
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 6.8e-148 529.6 1378 48.2
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 8.3e-146 522.7 1582 42.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.5e-142 511.1 1392 45.0
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.9e-140 502.7 1396 35.4
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.4e-139 500.7 1378 45.8
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.5e-134 482.6 815 39.1
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.5e-131 473.0 1356 35.5
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.9e-129 468.4 1358 45.7
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 4.3e-126 457.2 976 52.4
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.3e-122 445.7 1358 40.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 3.2e-121 441.0 834 38.0
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.2e-120 439.1 1411 33.2
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 6.6e-119 433.3 826 36.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.8e-117 427.9 863 36.5
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 8.1e-117 426.4 815 37.9
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.8e-116 425.2 859 38.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.1e-112 411.8 810 37.5
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.3e-109 402.5 827 37.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-107 396.0 807 36.8
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-107 396.0 720 38.2
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.6e-107 394.8 830 37.2
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.9e-106 391.3 850 36.4
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 7.1e-105 386.7 819 36.1
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-104 386.0 834 36.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.1e-104 385.2 836 35.5
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 7.8e-104 383.3 1386 38.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 3.0e-103 381.3 1160 32.2
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 8.7e-103 379.8 1367 36.9
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 8.1e-101 373.2 1366 36.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.1e-100 372.9 897 33.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 4.0e-100 370.9 1390 35.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.0e-100 369.8 829 35.5
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 9.0e-100 369.8 1371 35.0
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.0e-99 368.6 1161 31.8
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 9.9e-99 366.3 831 34.3
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.7e-98 365.5 826 35.5
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.9e-97 362.1 1380 40.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.9e-97 362.1 797 37.5
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 5.4e-97 360.5 829 35.9
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 9.3e-97 359.8 1383 32.0
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 2.1e-96 358.6 827 35.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.7e-96 358.2 828 36.0
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.7e-96 358.2 835 35.3
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 4.6e-96 357.5 785 36.2
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.9e-95 354.4 656 38.3
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.9e-95 354.4 1390 33.2
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 8.7e-95 353.2 1372 35.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 5.6e-94 350.5 825 34.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.6e-94 350.5 841 34.7
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.1e-93 348.6 824 35.8
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.1e-92 346.3 1368 34.5
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-92 345.9 823 35.6
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-92 345.9 823 35.6
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.8e-92 345.5 769 35.6
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.4e-92 345.1 831 34.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.0e-92 343.2 829 35.2
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.0e-90 339.7 809 33.4
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 2.2e-90 338.6 652 38.2
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-90 338.2 823 35.4
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.2e-89 334.7 1386 31.2
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.2e-89 334.3 1379 36.4
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.1e-88 332.0 601 37.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 2.1e-88 332.0 651 37.8
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.8e-87 328.9 821 35.3
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.5e-86 325.1 1394 35.3
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 3.3e-86 324.7 833 33.1
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 3.3e-86 324.7 823 33.7
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 2.1e-85 322.0 825 33.6
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 3.7e-85 321.2 1372 36.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 6.2e-85 320.5 1411 37.1
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 2.0e-83 315.5 1387 37.4
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.4e-83 314.7 1378 34.9
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.7e-82 312.4 824 32.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 3.2e-81 308.1 819 31.9
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 9.3e-81 306.6 823 31.2
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.0e-79 301.6 830 31.6
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 5.1e-79 300.8 1350 34.1
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 9.7e-78 296.6 855 30.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.3e-77 296.2 1372 32.7
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 8.2e-77 293.5 852 31.9
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.4e-76 292.0 713 33.9
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 7.7e-75 287.0 1357 32.0
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.2e-73 281.6 606 35.8
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 9.4e-73 280.0 859 30.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.6e-72 278.1 810 33.1
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 6.1e-72 277.3 820 30.4
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 6.1e-72 277.3 467 39.4
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.0e-71 275.0 1375 31.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.9e-71 274.6 853 30.6
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 8.8e-71 273.5 827 30.0
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.5e-70 272.7 1252 35.1
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 2.0e-70 272.3 843 31.2
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 4.3e-70 271.2 596 35.1
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.7e-69 269.2 840 32.5
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.7e-69 269.2 526 36.7
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.2e-67 263.1 849 30.4
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 7.7e-67 260.4 595 35.6
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.0e-66 260.0 820 30.2
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 2.2e-66 258.8 701 33.7
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.8e-66 258.1 684 33.5
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.0e-66 257.7 1362 35.2
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 6.5e-66 257.3 702 33.0
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 8.5e-66 256.9 687 33.9
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.4e-65 256.1 707 33.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 7.2e-65 253.8 709 33.3
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 9.4e-65 253.4 705 32.9
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.2e-64 253.1 623 33.7
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 6.1e-64 250.8 1369 29.5
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.4e-63 249.6 690 31.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.8e-61 241.9 605 33.9
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.8e-61 241.9 970 41.0
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.8e-60 239.2 595 35.3
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 5.3e-60 237.7 711 31.5
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.1e-52 213.4 566 32.7
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 4.1e-52 211.5 473 33.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.3e-50 206.5 533 34.0
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 4.0e-47 194.9 724 30.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.5e-46 193.0 645 30.5
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.2e-41 175.3 706 28.6
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 7.2e-41 174.1 1161 30.3
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.2e-38 166.8 373 35.1
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.6e-35 156.4 675 28.6
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-32 146.7 630 28.4
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.0e-30 139.4 732 26.5
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.8e-23 114.4 332 36.1
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-22 113.2 203 35.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-22 113.2 203 35.5
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 7.0e-20 104.4 878 24.1
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.3e-18 100.1 318 36.2
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.5e-17 96.7 681 27.5
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.5e-17 94.0 147 50.3
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.7e-16 91.7 378 31.7
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 9.8e-14 84.0 280 28.9
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 6.4e-13 81.3 288 29.9


User provided reference genes

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