Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 6.7e-128 460.7 231 100.0
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 5.7e-79 298.1 226 69.0
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.2e-76 290.4 226 63.3
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 2.8e-73 279.3 232 64.2
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 2.3e-72 276.2 237 61.6
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 4.0e-72 275.4 242 59.9
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 4.0e-72 275.4 230 62.2
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 3.4e-71 272.3 244 59.0
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 5.8e-71 271.6 234 59.0
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 1.7e-70 270.0 239 59.4
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.1e-69 267.3 240 58.8
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.4e-69 266.9 237 60.8
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 4.1e-69 265.4 236 61.4
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 5.4e-69 265.0 231 62.3
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 9.2e-69 264.2 225 60.0
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 2.0e-68 263.1 231 62.3
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 2.0e-68 263.1 244 57.8
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.5e-68 262.3 244 59.4
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 7.8e-68 261.2 232 60.8
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 7.8e-68 261.2 232 61.6
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.0e-67 260.8 233 59.2
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 1.3e-67 260.4 224 61.2
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 3.0e-67 259.2 249 58.6
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 6.6e-67 258.1 174 70.1
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 6.6e-67 258.1 238 58.8
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.5e-66 256.9 201 62.7
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 2.5e-66 256.1 230 59.1
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 2.5e-66 256.1 236 60.2
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 2.5e-66 256.1 243 54.3
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 3.3e-66 255.8 245 56.7
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 5.6e-66 255.0 232 59.1
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 5.6e-66 255.0 238 60.1
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 5.6e-66 255.0 227 59.5
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 7.3e-66 254.6 226 60.6
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 7.3e-66 254.6 235 57.4
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 9.5e-66 254.2 234 59.4
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 2.8e-65 252.7 237 59.1
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 8.0e-65 251.1 235 56.6
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 8.0e-65 251.1 224 58.9
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.1e-64 250.8 241 58.9
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.1e-64 250.8 225 59.1
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 1.4e-64 250.4 241 58.9
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.8e-64 250.0 240 57.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.3e-64 249.6 242 57.4
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 3.1e-64 249.2 212 65.1
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 8.9e-64 247.7 230 57.0
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 8.9e-64 247.7 230 57.0
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 8.9e-64 247.7 241 58.5
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 8.9e-64 247.7 225 58.7
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.5e-63 246.9 180 67.2
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 4.4e-63 245.4 208 59.6
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 5.8e-63 245.0 229 56.3
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 7.5e-63 244.6 250 56.4
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 1.7e-62 243.4 247 55.9
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.7e-62 243.4 237 53.2
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 2.2e-62 243.0 240 58.3
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 2.2e-62 243.0 232 57.8
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 1.4e-61 240.4 247 55.5
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 3.2e-61 239.2 247 54.7
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 3.2e-61 239.2 237 55.7
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 3.2e-61 239.2 242 55.8
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 4.1e-61 238.8 182 64.3
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 5.4e-61 238.4 236 54.7
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 5.4e-61 238.4 245 55.5
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 5.4e-61 238.4 183 66.1
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 7.0e-61 238.0 236 55.1
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.2e-60 237.3 232 55.2
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 1.6e-60 236.9 241 55.2
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.6e-60 236.9 244 56.6
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 3.5e-60 235.7 233 56.2
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.6e-60 235.3 244 56.6
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.6e-60 235.3 244 56.1
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.0e-59 234.2 189 64.0
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.7e-59 233.4 245 55.1
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 6.6e-59 231.5 237 53.6
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 1.1e-58 230.7 189 61.4
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 4.3e-58 228.8 243 50.6
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 4.3e-58 228.8 236 52.5
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 2.8e-57 226.1 255 52.2
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 8.1e-57 224.6 237 51.9
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 8.1e-57 224.6 224 55.4
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 1.1e-56 224.2 203 57.1
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 1.5e-55 220.3 255 50.2
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.0e-55 219.9 135 74.1
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.7e-54 216.9 239 51.5
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 1.7e-54 216.9 239 51.5
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 5.4e-53 211.8 190 56.3
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 2.1e-52 209.9 241 49.0
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.9e-50 203.4 190 53.2
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 4.7e-49 198.7 238 49.2
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 6.2e-49 198.4 242 49.2
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 1.5e-47 193.7 234 47.4
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.4e-45 186.4 234 49.6
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 2.1e-44 183.3 229 46.7
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 3.0e-43 179.5 234 44.4
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 2.5e-42 176.4 188 48.4
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 4.7e-41 172.2 229 44.5
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 5.4e-37 158.7 184 47.3
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 4.3e-34 149.1 205 44.4
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 6.7e-27 125.2 229 41.0
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 6.7e-27 125.2 229 41.0
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.3e-26 122.9 131 55.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.4e-24 117.5 145 49.7
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 2.0e-23 113.6 148 46.6
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.3e-22 110.9 159 45.9
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 6.4e-22 108.6 166 40.4
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 6.4e-22 108.6 166 40.4
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 6.4e-22 108.6 166 40.4
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 9.3e-21 104.8 149 44.3
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.2e-20 104.4 151 45.7
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 4.6e-20 102.4 128 49.2
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 2.3e-19 100.1 143 42.7
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 2.3e-19 100.1 144 45.8
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.9e-19 99.4 142 45.1
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 8.7e-19 98.2 135 47.4
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 1.9e-18 97.1 97 52.6
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 3.3e-18 96.3 130 45.4
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 2.1e-17 93.6 148 43.9
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 2.8e-17 93.2 141 41.8
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 2.8e-17 93.2 123 47.2
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 8.2e-17 91.7 102 52.0
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 3.1e-16 89.7 128 48.4
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 4.5e-15 85.9 107 48.6
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.4e-13 80.9 65 61.5
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 5.3e-08 62.4 49 67.3


User provided reference genes

Program Settings