Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.8e-273 945.3 454 100.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 6.6e-220 767.3 457 79.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.6e-219 764.2 458 79.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.2e-218 763.1 455 76.7
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.7e-218 761.1 458 79.7
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.7e-218 761.1 458 79.7
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 6.1e-218 760.8 455 76.7
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 8.9e-217 756.9 454 76.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.3e-215 753.1 458 77.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.9e-215 751.9 458 76.9
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 3.7e-215 751.5 458 77.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.9e-215 751.1 458 77.9
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.4e-215 750.7 458 76.6
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.4e-214 749.6 458 76.4
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 4.1e-214 748.0 452 78.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.6e-213 746.1 458 77.9
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.0e-213 745.7 456 78.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.0e-213 745.7 452 78.8
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.7e-213 745.3 448 79.0
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.9e-213 744.2 458 76.4
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 7.8e-213 743.8 460 77.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 7.8e-213 743.8 460 76.7
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.3e-212 743.0 472 75.6
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.3e-212 743.0 465 75.9
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.0e-212 741.9 455 77.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.6e-212 740.3 457 76.6
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 4.3e-211 738.0 455 74.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.2e-208 729.9 458 74.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.5e-208 729.6 455 74.9
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 4.4e-208 728.0 439 78.4
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.9e-207 725.3 461 74.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.6e-205 719.5 458 74.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.0e-204 716.8 458 74.7
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.0e-204 715.3 456 73.7
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.9e-203 712.6 445 76.9
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 7.3e-203 710.7 459 74.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 9.5e-203 710.3 458 73.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.2e-202 709.9 453 74.4
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 4.7e-202 708.0 449 74.8
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 6.2e-202 707.6 456 72.4
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-201 706.8 449 75.3
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.2e-200 703.4 458 76.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.5e-200 703.0 439 75.6
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 5.8e-200 701.0 425 78.4
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.9e-198 696.0 426 77.2
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.2e-198 695.3 420 77.1
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.1e-198 694.9 431 75.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.4e-198 694.5 425 76.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 7.1e-198 694.1 426 77.5
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 9.2e-198 693.7 423 76.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 4.6e-197 691.4 455 72.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-196 689.9 457 70.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.7e-196 689.5 457 71.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.0e-196 688.7 457 70.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-196 688.3 457 70.7
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 8.6e-196 687.2 428 75.2
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.1e-195 686.8 448 72.1
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.9e-195 686.0 452 72.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.6e-195 684.5 449 72.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.6e-194 681.8 455 71.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-194 681.4 466 70.6
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 6.2e-194 681.0 452 70.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.4e-193 679.1 423 75.2
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.6e-192 675.6 468 70.9
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.8e-192 674.5 434 73.0
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.9e-192 673.7 467 70.2
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-191 672.9 472 68.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-191 672.9 455 70.8
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.8e-191 671.8 395 79.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 6.4e-191 671.0 455 70.1
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.2e-190 668.7 454 70.3
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.1e-187 660.2 463 70.0
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.5e-187 659.8 457 71.8
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.3e-187 658.7 458 69.7
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 9.6e-187 657.1 438 72.4
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 2.8e-186 655.6 491 66.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 8.1e-186 654.1 486 68.1
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 6.9e-185 651.0 407 74.2
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 8.4e-183 644.0 464 67.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.3e-180 636.7 465 68.0
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 4.8e-178 628.2 463 64.4
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.0e-177 625.2 458 62.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.6e-176 620.9 459 63.6
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.2e-175 619.4 462 63.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.9e-175 619.0 459 63.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 4.9e-175 618.2 454 65.2
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 6.4e-175 617.8 462 63.6
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 8.4e-175 617.5 453 63.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.4e-174 616.7 459 62.7
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.4e-174 615.9 369 78.3
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.2e-174 615.1 460 62.6
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 9.3e-174 614.0 460 66.5
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-173 613.6 385 76.6
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.7e-173 612.5 462 66.7
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.5e-173 612.1 462 62.6
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.5e-173 612.1 462 62.6
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.5e-173 612.1 459 63.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.6e-173 611.7 393 73.8
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 7.9e-173 610.9 461 62.7
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.1e-171 607.1 448 64.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.4e-169 600.1 440 66.6
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 5.8e-168 594.7 380 76.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 7.6e-168 594.3 462 61.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.3e-167 593.6 424 65.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.6e-165 585.1 473 63.0
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.8e-164 583.2 539 56.8
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 2.3e-164 582.8 472 59.5
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.1e-155 553.9 455 55.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.5e-155 553.5 424 62.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 9.7e-155 550.8 403 64.3
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 9.7e-155 550.8 490 56.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.8e-153 546.6 436 58.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 5.9e-152 541.6 450 58.4
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 7.6e-152 541.2 421 64.4
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.6e-149 533.5 432 57.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.0e-140 502.7 350 68.9
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 9.7e-139 497.7 421 58.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 8.0e-133 478.0 467 54.2
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 8.2e-130 468.0 408 57.8
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 3.6e-125 452.6 290 75.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.7e-124 448.4 452 54.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 3.2e-118 429.5 289 69.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.2e-118 429.1 334 66.2
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.2e-118 429.1 346 58.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.2e-117 427.6 346 59.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.4e-113 413.3 271 70.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.0e-113 411.8 417 53.7
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.0e-108 396.4 382 49.5
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 4.0e-92 342.8 209 74.2
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 5.8e-91 339.0 426 41.5
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 8.3e-90 335.1 409 42.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.0e-84 316.2 281 59.8
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 6.8e-84 315.5 213 72.8
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.8e-68 264.2 175 74.3
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.1e-56 224.2 196 56.1
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-55 220.7 228 56.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.1e-53 214.2 119 79.0
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.4e-52 210.7 202 54.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-42 177.2 109 77.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.2e-41 173.7 155 58.1
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.9e-40 169.1 256 41.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 7.9e-40 169.1 231 41.1
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-39 167.9 254 41.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 8.2e-37 159.1 85 83.5
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-36 157.5 195 46.2
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-32 144.4 99 69.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.7e-27 125.9 254 35.8
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.0e-23 114.0 71 71.8
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.3e-21 108.6 85 61.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.6e-19 100.9 62 77.4
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.0e-18 99.0 123 40.7
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 9.4e-17 92.4 70 64.3
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-12 77.8 78 56.4
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.6e-11 74.3 61 67.2
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.2e-10 71.2 36 88.9
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 2.6e-06 57.8 78 51.3
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.4e-06 57.0 42 57.1


User provided reference genes

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