Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.6e-121 439.5 226 100.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 5.3e-45 185.3 166 64.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 5.3e-45 185.3 160 65.0
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 6.9e-45 184.9 158 65.8
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 4.3e-39 165.6 174 59.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 7.4e-39 164.9 170 57.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.7e-39 164.5 200 53.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.7e-39 164.5 200 53.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 9.7e-39 164.5 148 62.2
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-38 164.1 200 53.0
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.7e-38 162.5 199 51.8
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.4e-37 160.6 163 56.4
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 5.9e-36 155.2 157 61.1
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 7.7e-36 154.8 173 54.9
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.0e-35 154.5 164 59.1
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.3e-35 154.1 160 56.9
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.9e-35 152.9 152 58.6
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 5.0e-35 152.1 155 56.1
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.4e-34 150.6 155 56.8
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.4e-34 150.6 185 50.3
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.4e-34 150.6 185 50.3
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.5e-34 149.8 178 54.5
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 3.2e-34 149.4 155 56.1
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 5.5e-34 148.7 161 55.9
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 9.4e-34 147.9 156 58.3
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.6e-33 147.1 176 55.7
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 4.7e-33 145.6 157 54.8
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 6.1e-33 145.2 213 49.8
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.0e-32 144.4 165 55.8
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.4e-32 144.1 153 54.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.8e-32 143.7 156 55.8
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 3.0e-32 142.9 163 55.2
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 3.9e-32 142.5 143 58.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 5.1e-32 142.1 158 53.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 6.7e-32 141.7 166 55.4
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 8.8e-32 141.4 155 55.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 8.8e-32 141.4 198 48.0
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.1e-31 141.0 178 51.7
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.1e-31 141.0 173 52.6
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.6e-31 139.8 164 54.3
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 3.3e-31 139.4 156 53.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 3.3e-31 139.4 187 51.3
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 4.4e-31 139.0 161 55.9
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.4e-31 138.3 179 52.5
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.7e-30 137.1 159 54.7
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.7e-30 137.1 159 54.7
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.8e-30 136.3 165 50.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.8e-30 136.3 165 50.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.3e-30 135.2 175 49.7
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 8.2e-30 134.8 162 54.3
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-29 134.4 165 50.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.1e-29 134.4 180 52.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-29 133.7 157 53.5
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.1e-29 132.5 180 50.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 5.3e-29 132.1 157 54.1
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.2e-28 131.0 172 50.0
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.2e-28 131.0 181 48.1
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.6e-28 129.8 183 48.6
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 3.5e-28 129.4 177 48.0
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.5e-28 129.4 157 52.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.5e-28 129.4 157 52.9
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.5e-28 129.4 157 54.1
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 4.5e-28 129.0 183 47.5
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 4.5e-28 129.0 159 51.6
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 7.7e-28 128.3 169 49.7
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.7e-28 128.3 157 51.0
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.7e-27 127.1 157 52.2
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.2e-27 126.7 199 42.7
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.8e-27 125.9 238 41.2
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.0e-27 125.6 172 48.8
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 6.5e-27 125.2 179 47.5
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.1e-26 124.4 174 48.3
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.5e-26 124.0 252 39.3
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.5e-26 124.0 161 50.3
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.5e-26 124.0 165 48.5
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.5e-26 124.0 171 48.5
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-26 123.6 246 39.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 2.5e-26 123.2 244 39.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 2.5e-26 123.2 244 39.3
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 5.5e-26 122.1 180 48.3
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.4e-26 121.3 240 39.2
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 9.4e-26 121.3 155 53.5
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 9.4e-26 121.3 173 48.0
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.6e-25 120.6 186 47.3
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.6e-25 120.6 193 44.6
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.7e-25 119.8 246 38.6
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.7e-25 119.8 179 44.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 6.1e-25 118.6 160 50.6
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 6.1e-25 118.6 174 47.7
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 6.1e-25 118.6 216 42.1
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 6.1e-25 118.6 195 44.1
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.8e-24 117.1 171 48.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.8e-24 117.1 151 52.3
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 5.2e-24 115.5 186 44.6
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 8.8e-24 114.8 181 48.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.3e-23 112.8 159 47.8
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 5.7e-23 112.1 169 46.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.8e-22 109.8 169 45.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 3.7e-22 109.4 162 43.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.3e-22 108.6 154 47.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 8.2e-22 108.2 214 41.1
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 7.0e-21 105.1 174 44.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.6e-20 104.0 140 52.1
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 2.0e-20 103.6 212 38.7
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.3e-19 100.9 167 44.3
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 3.8e-19 99.4 155 45.2
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 6.5e-19 98.6 159 44.0
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.5e-18 97.4 158 44.9
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 3.2e-18 96.3 119 52.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 5.5e-18 95.5 156 43.6
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.2e-17 94.4 234 33.3
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 3.6e-17 92.8 155 43.9
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.0e-16 91.3 153 43.8
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.4e-16 90.9 156 43.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.4e-16 90.9 84 60.7
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-16 90.5 98 55.1
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-16 90.5 98 55.1
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-16 90.5 98 55.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.3e-16 90.1 169 37.9
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.3e-16 90.1 171 41.5
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 3.0e-16 89.7 154 42.9
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 8.8e-16 88.2 209 36.4
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.0e-15 87.0 235 36.6
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.6e-15 86.7 227 35.7
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 3.1e-13 79.7 220 33.6
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.0e-13 78.6 84 57.1
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 2.7e-12 76.6 167 37.1
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 2.7e-12 76.6 121 41.3
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 3.5e-12 76.3 121 41.3
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.9e-12 75.5 154 39.6
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.1e-10 71.2 151 39.7
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.5e-10 70.1 92 46.7
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 4.2e-10 69.3 73 56.2
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 5.5e-10 68.9 73 53.4
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 9.4e-10 68.2 97 48.5
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-09 67.4 128 42.2
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.6e-09 67.4 87 49.4
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 4.7e-09 65.9 95 47.4
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 4.7e-09 65.9 90 47.8
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 4.7e-09 65.9 102 45.1
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.1e-09 65.5 128 42.2
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.1e-09 65.5 128 42.2
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 8.0e-09 65.1 89 47.2
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.0e-08 64.7 69 58.0
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.0e-08 62.8 93 47.3
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 1.5e-07 60.8 116 37.9
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.7e-07 58.9 138 38.4
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.7e-07 58.9 138 38.4
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 5.7e-07 58.9 50 60.0
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 2.2e-06 57.0 166 31.9
Ah.12g052340 Amaranthus hybridus HOM05D005006 ORTHO05D005903 3.7e-06 56.2 144 34.0


User provided reference genes

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