Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 3014.2 1513 100.0
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1813.5 1546 61.5
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1676.0 1539 59.0
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1668.3 1535 58.1
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1654.0 1541 57.7
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1652.1 1551 57.8
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1648.3 1535 57.6
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1640.6 1541 57.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1639.4 1541 57.3
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1631.7 1520 57.1
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1629.0 1538 57.2
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1626.3 1570 56.6
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1591.2 1558 56.5
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1586.2 1538 55.9
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1585.9 1531 56.6
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1583.9 1561 56.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1578.5 1536 55.5
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1577.8 1532 56.0
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1576.6 1524 56.2
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1574.3 1546 55.4
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1573.1 1483 57.0
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1569.3 1535 55.3
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1567.7 1534 55.9
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1565.4 1540 55.5
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1563.5 1540 55.7
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1560.8 1531 55.4
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1560.0 1538 56.0
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1555.4 1544 55.3
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1555.4 1570 55.0
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1554.3 1506 57.0
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1552.0 1489 57.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1539.6 1574 53.9
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1538.9 1557 53.3
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1536.9 1544 55.4
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1535.8 1569 54.8
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1534.6 1540 54.4
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1527.7 1497 55.6
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1524.2 1510 54.5
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1524.2 1628 52.5
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1516.1 1523 54.7
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1491.5 1516 54.1
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1488.0 1620 52.0
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1484.9 1540 53.6
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1481.8 1540 52.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1480.3 1530 53.1
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1478.8 1541 52.8
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1472.2 1438 56.1
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1470.7 1528 53.1
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1460.7 1533 51.9
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1458.7 1532 52.0
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1457.6 1528 52.6
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1456.8 1527 53.0
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1454.1 1529 52.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1451.8 1527 52.6
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1435.6 1523 52.6
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1434.9 1537 51.8
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1518 52.4
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1427.2 1532 51.8
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1426.0 1537 52.2
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1424.5 1515 52.5
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1422.1 1535 51.8
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1421.4 1535 52.2
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1418.3 1536 50.3
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1417.1 1540 51.8
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1415.2 1521 51.6
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1414.4 1533 52.2
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1413.7 1518 51.7
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1413.7 1518 51.7
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1412.1 1539 50.3
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1410.6 1557 51.1
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1407.5 1535 51.1
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1403.3 1592 49.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1397.9 1518 52.1
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1389.0 1535 51.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1387.5 1513 51.1
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1387.5 1522 50.3
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1386.3 1546 51.2
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1377.8 1534 50.8
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1375.5 1533 50.7
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1375.1 1526 50.9
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1356.7 1594 48.9
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1355.5 1359 55.0
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1352.0 1543 50.1
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1317.4 1533 49.1
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1312.7 1610 47.8
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1311.2 1357 54.0
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1274.2 1421 49.4
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1249.2 1142 59.6
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1220.7 1365 50.1
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1209.5 1566 44.3
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1182.5 1305 50.6
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1180.2 1464 47.5
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1171.4 1094 59.0
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1167.9 1547 45.1
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 3.0e-309 1065.8 1563 41.6
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 7.7e-249 865.1 1014 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 3.8e-248 862.8 1634 35.8
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.7e-192 677.9 934 43.6
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.1e-183 648.7 483 69.8
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.9e-181 639.4 483 69.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.0e-172 611.3 1528 30.4
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.6e-143 514.6 1040 34.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.5e-119 435.6 712 39.7
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 4.9e-86 324.3 417 46.0
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 8.1e-73 280.4 610 33.0
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.1e-56 226.9 186 61.8
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 1.0e-43 183.7 163 62.6
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 3.2e-37 162.2 107 68.2
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.1e-28 132.9 91 64.8
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.7e-28 132.5 89 66.3
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.5e-26 126.7 110 56.4
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.8e-24 119.8 85 68.2
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-21 110.5 81 67.9
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.7e-20 105.1 92 60.9
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.7e-20 105.1 92 60.9
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.8e-16 93.2 67 74.6
Cre17.g739050 Chlamydomonas reinhardtii HOM05D053933 ORTHO05D008092 1.2e-07 63.9 150 30.7
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 4.5e-07 62.0 85 49.4


User provided reference genes

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