Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.8e-194 682.6 379 100.0
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 6.9e-122 441.4 377 62.3
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 3.8e-120 435.6 380 63.2
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 9.3e-119 431.0 378 61.6
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 3.5e-118 429.1 376 61.7
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 6.0e-118 428.3 376 62.0
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 7.9e-118 427.9 376 62.0
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.3e-117 426.4 379 61.2
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.3e-117 426.4 378 61.6
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 3.3e-116 422.5 385 62.1
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 9.6e-116 421.0 376 61.4
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.7e-115 419.1 376 60.6
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.1e-114 417.5 376 60.6
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.8e-114 416.8 384 61.2
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.0e-114 415.6 385 61.3
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 5.3e-114 415.2 376 60.1
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 9.0e-114 414.5 379 59.6
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.2e-113 414.1 376 59.8
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 2.0e-113 413.3 378 59.8
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 2.6e-113 412.9 376 60.1
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.8e-113 411.8 376 59.8
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 1.7e-112 410.2 389 58.6
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 2.5e-111 406.4 377 59.7
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.2e-111 406.0 375 59.7
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 3.2e-111 406.0 379 58.6
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 7.1e-111 404.8 381 58.8
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 7.1e-111 404.8 377 61.3
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 9.3e-111 404.4 381 59.1
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.1e-110 403.3 379 59.9
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.1e-110 403.3 379 57.8
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.7e-110 402.9 376 60.1
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 7.9e-110 401.4 381 59.1
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 7.9e-110 401.4 384 57.3
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.0e-109 401.0 384 60.7
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.3e-109 399.8 379 59.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 3.0e-109 399.4 377 57.6
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 6.7e-109 398.3 409 55.5
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 8.7e-109 397.9 378 58.5
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.5e-108 396.4 376 58.8
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.5e-108 396.4 377 59.7
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 4.3e-108 395.6 386 57.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 4.3e-108 395.6 378 59.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 7.4e-108 394.8 376 57.2
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.3e-107 394.0 383 57.7
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.6e-107 393.7 382 58.4
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 2.2e-107 393.3 384 58.1
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.7e-107 392.5 382 56.5
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.7e-107 392.5 414 54.8
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 6.3e-107 391.7 379 59.4
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 1.1e-106 391.0 376 58.8
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.1e-106 391.0 379 59.4
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 2.4e-106 389.8 378 57.1
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 4.1e-106 389.0 404 54.7
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 6.9e-106 388.3 380 56.6
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 6.9e-106 388.3 376 59.0
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.5e-105 387.1 378 56.6
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.5e-105 387.1 381 57.2
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 2.6e-105 386.3 404 54.7
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.4e-105 386.0 383 56.4
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.4e-105 386.0 378 59.3
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 4.5e-105 385.6 384 57.3
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 5.0e-104 382.1 383 56.7
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 8.5e-104 381.3 378 58.5
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 8.5e-104 381.3 378 59.0
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 2.5e-103 379.8 392 55.4
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 9.3e-103 377.9 378 55.6
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.2e-102 377.5 385 60.0
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 5.1e-101 372.1 359 57.4
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.5e-100 370.5 393 52.9
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 5.7e-100 368.6 383 55.4
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 7.4e-100 368.2 384 53.9
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 2.2e-99 366.7 375 55.5
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 3.7e-99 365.9 376 53.7
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 6.3e-99 365.2 380 55.5
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 8.2e-99 364.8 421 49.4
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 1.1e-98 364.4 397 53.9
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 5.3e-98 362.1 396 51.5
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 9.1e-98 361.3 399 55.9
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.5e-97 360.5 367 56.9
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.0e-96 357.8 416 52.6
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 2.2e-96 356.7 413 50.6
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 2.2e-96 356.7 432 47.2
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 5.5e-95 352.1 408 51.2
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.6e-94 350.5 410 50.2
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 2.1e-94 350.1 403 51.4
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 1.8e-93 347.1 412 49.8
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 2.3e-93 346.7 399 50.6
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 3.9e-93 345.9 418 52.2
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 5.1e-93 345.5 420 49.8
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 1.1e-92 344.4 409 49.9
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 2.6e-92 343.2 419 49.6
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 9.7e-92 341.3 377 51.2
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.7e-91 340.5 420 51.9
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 2.8e-91 339.7 392 50.8
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 4.8e-91 339.0 420 48.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-90 337.8 374 53.2
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.4e-90 337.4 394 49.7
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 9.1e-90 334.7 418 48.8
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.3e-88 330.9 401 51.6
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 2.9e-88 329.7 421 48.7
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 5.0e-88 328.9 399 48.9
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.4e-87 327.4 421 47.7
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 3.2e-87 326.2 363 52.6
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.2e-86 324.3 399 48.9
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.6e-86 323.9 410 49.0
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 6.1e-86 322.0 332 54.5
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 8.0e-86 321.6 380 53.2
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 2.6e-84 316.6 380 50.3
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 9.7e-84 314.7 379 51.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.6e-81 307.4 335 54.0
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 6.1e-78 295.4 431 43.4
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.4e-61 241.1 300 49.3
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 2.5e-55 220.3 372 39.5
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.2e-52 211.5 418 40.0
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.3e-51 208.0 191 61.3
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.3e-51 208.0 191 61.3
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.3e-51 208.0 191 61.3
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.2e-49 201.4 485 36.3
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 8.0e-46 188.7 530 31.5
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 1.4e-45 188.0 291 42.6
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 4.1e-42 176.4 302 39.7
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.9e-39 167.5 144 62.5
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.2e-37 159.5 377 35.0
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.2e-36 158.3 403 37.0
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 4.1e-34 149.8 144 64.6
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 4.3e-31 139.8 144 54.2
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 2.1e-30 137.5 204 44.6
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 2.4e-29 134.0 131 58.0
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.9e-23 114.4 309 34.0
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 6.2e-22 109.4 182 40.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 5.8e-20 102.8 376 30.9
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 5.8e-20 102.8 376 30.9
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 7.3e-15 85.9 90 54.4
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.4e-12 77.0 113 42.5
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 2.2e-11 74.3 45 73.3
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 1.8e-08 64.7 331 33.5
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 5.1e-08 63.2 68 47.1


User provided reference genes

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