Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 1.4e-181 639.4 313 100.0
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.8e-82 308.5 295 52.5
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.7e-81 307.0 307 50.8
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.7e-81 307.0 310 50.3
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.1e-80 304.3 291 52.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.2e-79 300.8 308 48.7
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 2.7e-79 299.7 295 49.8
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.7e-79 299.7 309 49.8
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.6e-79 298.9 318 49.7
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 7.8e-79 298.1 307 47.2
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.0e-78 297.7 306 50.0
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.7e-78 297.0 302 49.0
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 2.3e-78 296.6 315 48.9
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 3.9e-78 295.8 308 48.1
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 6.6e-78 295.0 289 48.4
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 6.6e-78 295.0 292 52.1
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 6.6e-78 295.0 294 49.3
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 8.6e-78 294.7 308 47.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.1e-77 294.3 294 49.3
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-77 294.3 292 51.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.1e-77 294.3 300 50.3
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.5e-77 293.9 307 46.9
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.9e-77 293.5 293 50.2
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.9e-77 293.5 294 50.3
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.9e-77 293.5 292 50.7
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.3e-77 292.7 292 51.0
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 3.3e-77 292.7 289 49.1
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 4.3e-77 292.4 309 48.2
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 4.3e-77 292.4 302 48.3
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.3e-77 292.4 286 51.0
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.3e-77 292.4 307 50.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 9.5e-77 291.2 290 51.0
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 9.5e-77 291.2 288 49.7
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.2e-76 290.8 289 48.4
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.2e-76 290.8 294 48.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.6e-76 290.4 292 50.0
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.6e-76 290.4 296 50.7
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.1e-76 290.0 289 48.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 2.1e-76 290.0 289 49.5
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 3.6e-76 289.3 292 49.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.6e-76 289.3 298 49.7
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 6.2e-76 288.5 312 49.0
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 6.2e-76 288.5 293 49.8
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 8.0e-76 288.1 291 49.8
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.1e-75 287.7 299 48.5
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.1e-75 287.7 286 51.4
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-75 287.7 294 48.3
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.1e-75 287.7 298 46.3
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-75 287.3 299 48.5
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.8e-75 287.0 316 47.8
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.8e-75 287.0 296 48.3
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.8e-75 287.0 289 51.2
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.3e-75 286.6 299 48.2
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.1e-75 286.2 302 48.7
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 4.0e-75 285.8 330 45.5
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.0e-75 285.8 294 49.0
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 8.9e-75 284.6 292 47.9
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 8.9e-75 284.6 296 49.0
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.2e-74 284.3 306 48.7
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.2e-74 284.3 291 48.5
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.5e-74 283.9 291 47.4
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 4.4e-74 282.3 284 47.9
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 4.4e-74 282.3 303 48.2
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 5.8e-74 282.0 299 48.8
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 7.5e-74 281.6 291 48.1
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 9.8e-74 281.2 299 48.5
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.2e-73 280.0 292 49.0
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 4.9e-73 278.9 296 49.0
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 5.4e-72 275.4 298 45.3
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 5.4e-72 275.4 287 47.7
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 5.4e-72 275.4 314 45.9
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 7.0e-72 275.0 286 47.9
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.6e-71 273.9 286 47.2
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.6e-71 273.9 286 47.2
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.1e-71 273.5 293 46.8
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 2.1e-71 273.5 283 47.7
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 6.0e-71 271.9 289 47.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.8e-71 271.6 294 45.9
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.8e-71 271.6 294 45.9
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-70 271.2 286 46.9
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.3e-70 270.8 287 47.7
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.7e-70 270.4 290 48.3
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.7e-70 270.4 288 47.6
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.0e-70 269.6 293 47.4
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 6.6e-70 268.5 296 47.3
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 8.6e-70 268.1 287 48.1
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 8.6e-70 268.1 347 42.4
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 8.6e-70 268.1 287 47.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.5e-69 267.3 293 46.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.9e-69 266.9 306 44.1
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.9e-69 266.9 285 47.0
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 3.3e-69 266.2 316 45.6
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 4.3e-69 265.8 307 46.6
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 5.6e-69 265.4 292 46.9
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 7.3e-69 265.0 306 44.4
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 7.3e-69 265.0 319 44.5
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 4.7e-68 262.3 306 43.8
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 8.1e-68 261.5 289 45.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.1e-67 261.2 306 43.8
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.1e-67 261.2 306 44.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.4e-67 260.8 306 43.8
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.4e-67 260.8 306 43.8
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.8e-67 260.4 291 45.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.8e-67 260.4 306 43.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.8e-67 260.4 306 44.1
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.3e-67 260.0 299 46.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.1e-67 259.6 325 43.1
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.0e-67 259.2 306 43.1
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 4.0e-67 259.2 272 50.0
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 5.2e-67 258.8 306 43.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-66 257.7 267 50.2
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.9e-65 253.1 269 48.0
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.3e-65 251.5 329 40.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.4e-64 250.0 289 45.7
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.0e-62 244.6 299 43.8
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 6.4e-57 225.3 285 42.8
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.7e-54 217.2 259 45.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 8.1e-52 208.4 216 49.1
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.4e-51 207.6 197 51.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.0e-51 204.9 294 40.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.4e-50 202.6 205 48.3
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 3.2e-48 196.4 329 37.1
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.6e-47 192.6 200 47.5
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 6.6e-46 188.7 288 35.1
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.9e-45 187.2 294 39.5
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-45 186.0 156 56.4
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 7.3e-45 185.3 156 56.4
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 9.0e-43 178.3 286 35.0
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.1e-38 162.5 163 49.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 9.0e-35 151.8 169 47.9
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.5e-32 142.5 122 51.6
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 9.3e-32 141.7 200 42.0
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 3.7e-28 129.8 168 42.3
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.8e-27 127.5 158 42.4
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.8e-19 100.9 117 41.9
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 3.4e-18 96.7 85 52.9
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 5.0e-17 92.8 321 27.1
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.1e-15 87.4 115 41.7
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 7.9e-15 85.5 69 58.0
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 7.9e-15 85.5 87 42.5
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.1e-11 73.2 87 43.7
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.0e-10 70.9 65 44.6
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 5.0e-09 66.2 48 54.2
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 3.6e-07 60.1 50 56.0
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-06 58.5 42 50.0


User provided reference genes

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