Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 2.3e-82 308.9 165 100.0
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.6e-43 179.9 124 76.6
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.6e-43 179.9 124 76.6
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.8e-43 179.1 134 73.9
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 3.6e-43 178.7 165 61.8
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 4.7e-43 178.3 137 70.8
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 6.2e-43 177.9 130 74.6
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 6.2e-43 177.9 131 71.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.1e-42 177.2 150 65.3
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.4e-42 176.8 109 83.5
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.8e-42 176.4 130 73.8
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 1.8e-42 176.4 140 70.0
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 3.1e-42 175.6 109 83.5
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 3.1e-42 175.6 161 65.2
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 4.0e-42 175.3 137 68.6
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 4.0e-42 175.3 140 69.3
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.2e-42 174.9 158 63.9
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 6.8e-42 174.5 109 82.6
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 1.2e-41 173.7 148 69.6
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.6e-41 172.6 109 79.8
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 2.6e-41 172.6 160 62.5
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.4e-41 172.2 166 60.8
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 4.4e-41 171.8 141 67.4
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 5.8e-41 171.4 135 70.4
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 9.9e-41 170.6 162 61.1
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.7e-40 169.9 140 65.7
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.9e-40 169.1 165 60.6
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 3.8e-40 168.7 148 66.2
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 4.9e-40 168.3 140 65.7
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.1e-39 167.2 123 72.4
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 3.2e-39 165.6 115 73.0
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 3.2e-39 165.6 109 77.1
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 4.1e-39 165.2 152 61.8
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 5.4e-39 164.9 136 69.1
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 5.4e-39 164.9 145 63.4
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 5.4e-39 164.9 158 61.4
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 9.2e-39 164.1 152 60.5
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.6e-38 163.3 123 70.7
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 2.1e-38 162.9 110 76.4
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 3.5e-38 162.2 144 62.5
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 7.8e-38 161.0 112 75.9
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 7.8e-38 161.0 123 69.1
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.3e-37 160.2 118 69.5
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.3e-37 160.2 168 57.7
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.3e-37 160.2 168 57.7
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 2.3e-37 159.5 144 61.8
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 3.0e-37 159.1 108 75.0
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 5.1e-37 158.3 137 65.0
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 6.6e-37 157.9 161 59.6
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 6.6e-37 157.9 108 72.2
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 2.5e-36 156.0 149 60.4
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 3.3e-36 155.6 147 58.5
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 4.3e-36 155.2 135 63.0
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.2e-35 153.7 136 61.0
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.2e-35 153.7 109 72.5
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.2e-35 153.7 132 62.1
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 6.2e-35 151.4 165 52.7
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 8.1e-35 151.0 142 58.5
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 8.1e-35 151.0 142 58.5
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 8.1e-35 151.0 155 56.8
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-34 150.6 142 57.7
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 1.1e-34 150.6 142 57.7
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 1.1e-34 150.6 141 61.7
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 1.4e-34 150.2 142 56.3
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-34 150.2 122 64.8
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 1.8e-34 149.8 109 67.9
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.4e-34 149.4 141 63.1
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.1e-34 149.1 133 60.2
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 5.2e-34 148.3 103 75.7
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 6.9e-34 147.9 142 57.0
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 6.9e-34 147.9 109 67.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 6.9e-34 147.9 109 67.9
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 5.8e-33 144.8 142 56.3
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 5.8e-33 144.8 181 51.4
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 7.6e-33 144.4 136 58.1
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 7.6e-33 144.4 136 58.1
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 7.6e-33 144.4 136 58.1
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.3e-32 143.7 110 64.5
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 2.9e-32 142.5 134 59.0
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.4e-31 139.4 87 81.6
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 3.2e-31 139.0 87 80.5
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 4.2e-31 138.7 86 81.4
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 4.2e-31 138.7 86 81.4
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.2e-30 137.1 113 63.7
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.1e-30 136.3 88 77.3
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.7e-30 136.0 142 59.9
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 3.5e-30 135.6 87 77.0
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.0e-29 134.0 118 63.6
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.3e-29 133.7 118 60.2
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 2.3e-29 132.9 108 66.7
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 2.3e-29 132.9 103 67.0
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.0e-29 132.5 108 66.7
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.0e-29 132.5 136 58.1
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.9e-29 132.1 136 57.4
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 1.5e-28 130.2 137 56.2
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.5e-28 130.2 93 71.0
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.9e-28 129.8 136 57.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.3e-28 129.0 114 61.4
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 5.6e-28 128.3 142 52.8
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 3.6e-27 125.6 162 48.1
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.1e-26 124.0 88 69.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 5.8e-25 118.2 103 66.0
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.3e-24 117.1 86 67.4
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 6.4e-24 114.8 94 66.0
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.1e-23 114.0 157 45.2
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.2e-23 112.5 158 44.3
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 3.5e-22 109.0 68 76.5
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 3.5e-22 109.0 73 72.6
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 7.9e-22 107.8 155 45.8
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 1.3e-21 107.1 100 57.0
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 1.5e-20 103.6 99 56.6
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 5.6e-20 101.7 105 55.2
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 2.1e-19 99.8 147 39.5
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 9.0e-18 94.4 91 53.8
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 2.2e-16 89.7 116 47.4
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.9e-15 86.7 110 53.6
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 7.1e-15 84.7 64 67.2
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.5e-14 82.4 110 51.8
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-13 80.5 56 69.6
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 2.3e-13 79.7 105 51.4
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.5e-12 77.0 99 45.5
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 9.6e-12 74.3 68 58.8
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 9.6e-12 74.3 83 44.6
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 9.6e-12 74.3 83 44.6
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 1.3e-11 73.9 68 58.8
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 8.1e-11 71.2 57 61.4
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 4.0e-10 68.9 43 76.7
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 7.9e-06 54.7 42 64.3
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 7.9e-06 54.7 42 64.3


User provided reference genes

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