Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 1.6e-129 466.1 230 100.0
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 7.0e-93 344.4 224 72.8
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.0e-91 340.5 224 71.0
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.0e-91 340.5 224 71.0
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 3.8e-91 338.6 224 71.0
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.6e-89 333.2 224 69.6
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 3.6e-89 332.0 224 69.6
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 8.0e-89 330.9 224 69.6
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 8.0e-89 330.9 222 69.4
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 8.0e-89 330.9 224 70.1
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.0e-88 330.5 232 71.1
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.8e-88 329.7 224 68.3
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 3.0e-88 328.9 224 69.2
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 3.9e-88 328.6 223 69.1
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 3.9e-88 328.6 224 69.2
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 5.2e-88 328.2 224 70.1
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 3.3e-87 325.5 228 68.0
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 5.7e-87 324.7 224 69.2
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 7.4e-87 324.3 224 69.2
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 7.4e-87 324.3 224 68.8
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 1.3e-86 323.6 224 68.8
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 3.7e-86 322.0 224 68.8
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 8.2e-86 320.9 224 67.9
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 5.3e-85 318.2 224 66.5
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 7.0e-85 317.8 228 68.0
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 2.0e-84 316.2 224 67.9
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 2.0e-84 316.2 223 67.3
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 5.0e-83 311.6 224 66.1
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 5.0e-83 311.6 224 67.0
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.1e-82 310.5 224 67.0
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 3.2e-82 308.9 224 66.1
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 5.5e-82 308.1 224 66.5
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 7.2e-82 307.8 224 63.8
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 9.4e-82 307.4 225 66.2
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 9.4e-82 307.4 225 66.2
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 1.6e-81 306.6 224 66.1
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.6e-81 306.6 224 65.6
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 1.6e-81 306.6 224 65.2
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.7e-81 305.8 224 63.8
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 6.1e-81 304.7 225 64.4
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 6.1e-81 304.7 224 66.1
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 8.0e-81 304.3 224 65.6
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.4e-80 303.5 217 65.9
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 1.8e-80 303.1 224 65.2
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.3e-80 302.8 225 65.3
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 2.3e-80 302.8 224 65.6
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 8.8e-80 300.8 224 64.3
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 1.2e-79 300.4 224 64.3
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 1.5e-79 300.1 224 62.5
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 2.0e-79 299.7 224 63.8
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 2.6e-79 299.3 224 65.2
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 3.3e-79 298.9 223 65.0
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 4.4e-79 298.5 224 62.5
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.4e-79 298.5 217 66.4
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 7.5e-79 297.7 223 64.1
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 2.2e-78 296.2 224 65.2
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 2.2e-78 296.2 224 65.2
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 2.8e-78 295.8 227 62.1
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 2.8e-78 295.8 223 64.1
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 6.3e-78 294.7 224 62.9
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 8.2e-78 294.3 224 62.1
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.1e-77 293.9 196 71.4
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 1.8e-77 293.1 224 60.7
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.1e-77 292.4 224 60.3
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.2e-76 290.4 224 63.4
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 5.9e-76 288.1 225 60.0
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 5.9e-76 288.1 225 60.0
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.7e-75 286.6 225 60.0
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.7e-75 286.6 225 60.0
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.7e-75 286.6 225 60.0
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.7e-75 286.6 224 64.3
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 8.5e-75 284.3 183 73.8
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 2.5e-74 282.7 225 60.9
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.7e-73 278.5 195 69.7
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 8.0e-73 277.7 224 58.9
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.8e-72 276.6 195 69.7
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.3e-72 276.2 195 69.2
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 3.0e-72 275.8 196 67.9
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 4.1e-69 265.4 221 60.2
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 7.0e-69 264.6 193 65.3
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 3.8e-67 258.8 181 67.4
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 5.0e-67 258.5 224 56.2
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 7.2e-66 254.6 196 64.3
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 4.7e-65 251.9 196 63.8
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 4.7e-65 251.9 190 64.2
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 8.9e-64 247.7 224 52.7
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 2.8e-62 242.7 224 52.2
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.1e-61 240.7 165 70.3
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 2.4e-61 239.6 159 71.1
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 9.2e-61 237.7 186 61.8
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 5.0e-59 231.9 220 49.5
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.5e-58 229.6 224 57.1
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.6e-57 225.7 182 62.1
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 3.6e-57 225.7 161 67.7
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 6.8e-56 221.5 181 62.4
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.7e-46 190.3 160 65.0
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 5.4e-45 185.3 222 39.6
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.6e-44 183.7 113 75.2
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.7e-44 183.0 134 61.9
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.3e-43 179.9 222 40.1
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.0e-43 179.5 219 43.4
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 5.2e-40 168.7 134 57.5
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.1e-29 134.4 90 64.4
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.1e-28 130.2 90 67.8
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 9.6e-26 121.3 227 29.5
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.3e-25 120.9 113 54.0
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.1e-24 116.3 213 29.6
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 3.2e-21 106.3 214 29.4
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 1.7e-19 100.5 113 50.4
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.9e-19 99.4 224 28.1
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 2.8e-17 93.2 204 29.9
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 3.1e-16 89.7 76 57.9
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 5.8e-15 85.5 114 40.4
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 3.3e-10 69.7 217 24.0
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 7.4e-10 68.6 68 52.9
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 4.8e-09 65.9 50 66.0
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 4.8e-09 65.9 216 24.5
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.6e-07 60.1 216 23.1
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 5.8e-07 58.9 166 26.5
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 5.8e-07 58.9 166 27.1
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 5.8e-07 58.9 220 24.1
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 7.6e-07 58.5 216 22.7
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 7.6e-07 58.5 217 25.3
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.7e-06 57.4 219 21.5
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.7e-06 57.4 218 22.5
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 2.9e-06 56.6 223 24.2
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 3.8e-06 56.2 218 22.0
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 3.8e-06 56.2 221 23.5
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.8e-06 56.2 217 24.0
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 4.9e-06 55.8 166 24.7
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 6.4e-06 55.5 166 26.5
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 6.4e-06 55.5 218 22.0
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 8.4e-06 55.1 215 20.9
CAN.G1231.36 Capsicum annuum HOM05D006617 ORTHO05D008247 8.4e-06 55.1 46 56.5
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 8.4e-06 55.1 108 27.8


User provided reference genes

Program Settings