Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 1.0e-119 433.3 208 100.0
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 4.3e-49 198.7 198 55.1
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 4.7e-48 195.3 192 55.7
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.1e-39 167.5 203 47.8
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 6.8e-39 164.9 193 49.7
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 4.9e-37 158.7 193 48.2
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 4.9e-37 158.7 161 55.3
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 6.4e-37 158.3 197 46.2
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 7.1e-36 154.8 192 48.4
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.6e-35 153.7 163 48.5
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 2.1e-35 153.3 201 44.8
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 4.6e-35 152.1 203 48.3
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 6.0e-35 151.8 198 48.0
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 7.8e-35 151.4 161 52.8
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 7.8e-35 151.4 161 52.8
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.0e-34 151.0 192 46.9
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.0e-34 151.0 192 47.4
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 1.3e-34 150.6 206 45.6
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 3.0e-34 149.4 193 46.6
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 3.0e-34 149.4 161 52.2
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 3.0e-34 149.4 200 45.0
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 3.9e-34 149.1 155 52.9
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 1.9e-33 146.7 197 45.7
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 2.5e-33 146.4 171 50.9
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 2.5e-33 146.4 197 46.7
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.3e-33 146.0 160 54.4
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.3e-33 146.0 160 53.8
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 3.3e-33 146.0 203 44.8
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 3.3e-33 146.0 197 47.2
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 7.3e-33 144.8 213 44.1
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 9.5e-33 144.4 160 53.8
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 3.6e-32 142.5 196 45.4
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 4.7e-32 142.1 202 43.1
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 2.4e-31 139.8 199 42.2
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 4.0e-31 139.0 204 42.6
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 6.8e-31 138.3 192 45.3
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 3.4e-30 136.0 170 48.2
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 3.4e-30 136.0 205 41.0
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 5.8e-30 135.2 200 40.0
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 7.6e-30 134.8 202 43.1
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 1.3e-26 124.0 206 38.8
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 4.3e-25 119.0 160 42.5
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 6.4e-21 105.1 126 42.1
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 6.4e-21 105.1 133 45.1
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 1.6e-19 100.5 193 34.7
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 6.0e-19 98.6 199 34.7
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 1.1e-17 94.4 88 54.5
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 2.5e-17 93.2 100 52.0
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 9.6e-17 91.3 57 70.2
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.4e-15 87.4 173 34.7
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 9.0e-15 84.7 176 34.1
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 1.2e-14 84.3 195 34.9
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 1.5e-14 84.0 167 36.5
Zm00001eb269500 Zea mays HOM05D041313 ORTHO05D010232 2.6e-14 83.2 201 31.8
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 5.8e-14 82.0 194 32.0
MBI12_g33658_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 1.7e-13 80.5 196 31.6
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 2.2e-13 80.1 199 31.2
MBI12_g33479_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 2.9e-13 79.7 188 34.0
MBI12_g47231_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 2.9e-13 79.7 165 33.3
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 4.9e-13 79.0 196 30.6
MBI12_g42336_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 4.9e-13 79.0 189 33.3
Os06g0128800 Oryza sativa ssp. japonica HOM05D041313 ORTHO05D010232 1.1e-12 77.8 182 30.2
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 1.1e-12 77.8 182 36.8
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 1.1e-12 77.8 174 35.6
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 1.9e-12 77.0 157 36.9
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 2.4e-12 76.6 201 27.9
Cfa004203 Carpinus fangiana HOM05D002113 ORTHO05D002124 9.3e-12 74.7 197 28.4
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 9.3e-12 74.7 94 42.6
CAN.G981.9 Capsicum annuum HOM05D008129 ORTHO05D010232 1.2e-11 74.3 84 45.2
MD07G1126500 Malus domestica HOM05D002113 ORTHO05D002124 1.2e-11 74.3 191 27.7
Sopen08g028850 Solanum pennellii HOM05D008129 ORTHO05D010232 1.2e-11 74.3 84 46.4
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.5e-11 72.8 87 44.8
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 3.5e-11 72.8 122 38.5
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 3.5e-11 72.8 197 29.9
Atru.chr5.424 Acer truncatum HOM05D002113 ORTHO05D002124 4.6e-11 72.4 97 38.1
Manes.01G260700 Manihot esculenta HOM05D002113 ORTHO05D002124 4.6e-11 72.4 147 33.3
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 4.6e-11 72.4 192 33.3
Haze_15206 Corylus avellana HOM05D002113 ORTHO05D002124 7.9e-11 71.6 140 30.7
CANSAT56G4224 Cannabis sativa HOM05D002113 ORTHO05D002124 1.8e-10 70.5 133 33.1
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.0e-10 69.7 87 44.8
Prupe.2G157400 Prunus persica HOM05D002113 ORTHO05D002124 3.0e-10 69.7 108 34.3
MBI04_g04725_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 6.7e-10 68.6 129 29.5
MBI04_g33641_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 6.7e-10 68.6 129 29.5
Oeu059238.1 Olea europaea HOM05D002113 ORTHO05D002124 6.7e-10 68.6 132 31.1
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 8.7e-10 68.2 77 51.9
Sed0006885 Sechium edule HOM05D002113 ORTHO05D002124 8.7e-10 68.2 150 34.0
MD07G1126400 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-09 67.8 145 27.6
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 1.1e-09 67.8 189 28.0
CsaV3_3G009180 Cucumis sativus L. HOM05D002113 ORTHO05D002124 1.5e-09 67.4 92 35.9
Manes.01G260800 Manihot esculenta HOM05D002113 ORTHO05D002124 1.5e-09 67.4 133 28.6
Manes.05G038800 Manihot esculenta HOM05D002113 ORTHO05D002124 1.5e-09 67.4 144 30.6
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 1.5e-09 67.4 210 26.7
VMungo1383G1522 Vigna mungo HOM05D002113 ORTHO05D002124 1.5e-09 67.4 190 28.9
Eucgr.E00208 Eucalyptus grandis HOM05D002113 ORTHO05D002124 1.9e-09 67.0 134 30.6
MELO3C006138.2 Cucumis melo HOM05D002113 ORTHO05D002124 2.5e-09 66.6 92 37.0
Potri.014G078700 Populus trichocarpa HOM05D002113 ORTHO05D002124 2.5e-09 66.6 129 32.6
ClCG05G001780 Citrullus lanatus HOM05D002113 ORTHO05D002124 3.3e-09 66.2 93 35.5
Glyma.07G076100 Glycine max HOM05D002113 ORTHO05D002124 5.6e-09 65.5 108 33.3
PGR031G2634 Punica granatum HOM05D002113 ORTHO05D002124 5.6e-09 65.5 101 33.7
Actinidia38301 Actinidia chinensis HOM05D002113 ORTHO05D002124 7.4e-09 65.1 162 30.2
Ciclev10022337m.g Citrus clementina HOM05D002113 ORTHO05D002124 7.4e-09 65.1 189 27.0
TWI23G0711 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 9.6e-09 64.7 142 29.6
Glyma.01G202200 Glycine max HOM05D002113 ORTHO05D002124 1.6e-08 63.9 98 32.7
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 1.6e-08 63.9 169 30.2
Gohir.D12G108400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 2.1e-08 63.5 130 30.8
MD01G1049600 Malus domestica HOM05D002113 ORTHO05D002124 2.1e-08 63.5 133 27.8
Phvul.002G004000 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 2.8e-08 63.2 190 27.9
Lj9C578T12 Lonicera japonica HOM05D002113 ORTHO05D002124 3.7e-08 62.8 103 31.1
arahy.Tifrunner.gnm1.ann1.T7PCV6 Arachis hypogaea HOM05D002113 ORTHO05D002124 4.8e-08 62.4 174 27.0
Glyma.11G040600 Glycine max HOM05D002113 ORTHO05D002124 4.8e-08 62.4 98 32.7
Potri.002G155300 Populus trichocarpa HOM05D002113 ORTHO05D002124 4.8e-08 62.4 142 31.7
Gohir.A12G104400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 6.2e-08 62.0 190 28.9
CAN.G170.16 Capsicum annuum HOM05D002113 ORTHO05D002124 8.1e-08 61.6 97 29.9
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 8.1e-08 61.6 81 48.1
CSS0019417 Camellia sinensis var. sinensis HOM05D002113 ORTHO05D002124 1.1e-07 61.2 137 27.7
MD07G1126300 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-07 61.2 139 28.1
VMungo0540G1579 Vigna mungo HOM05D001109 ORTHO05D001051 1.1e-07 61.2 175 29.7
Thecc.01G366100 Theobroma cacao HOM05D002113 ORTHO05D002124 1.4e-07 60.8 95 32.6
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 1.8e-07 60.5 83 41.0
Medtr8g432400 Medicago truncatula HOM05D002113 ORTHO05D002124 2.4e-07 60.1 132 28.0
Gohir.D11G090400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 3.1e-07 59.7 93 33.3
Gorai.007G096400 Gossypium raimondii HOM05D002113 ORTHO05D002124 3.1e-07 59.7 93 33.3
TWI23G0797 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 5.3e-07 58.9 113 30.1
Gorai.007G345600 Gossypium raimondii HOM05D001109 ORTHO05D001051 6.9e-07 58.5 97 33.0
Gohir.A11G299600 Gossypium hirsutum HOM05D001109 ORTHO05D001051 1.2e-06 57.8 97 33.0
PSO782G2100 Papaver somniferum HOM05D002113 ORTHO05D002124 1.2e-06 57.8 103 31.1
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 1.2e-06 57.8 103 31.1
Medtr8g432390 Medicago truncatula HOM05D002113 ORTHO05D002124 1.5e-06 57.4 96 30.2
Phvul.006G109100 Phaseolus vulgaris HOM05D001109 ORTHO05D001051 1.5e-06 57.4 153 32.0
TPR.G1501 Trifolium pratense HOM05D002113 ORTHO05D002124 1.5e-06 57.4 93 30.1
Aqoxy4G02273 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 2.0e-06 57.0 204 27.0
Medtr8g432350 Medicago truncatula HOM05D002113 ORTHO05D002124 2.6e-06 56.6 96 29.2
arahy.Tifrunner.gnm1.ann1.07VZ9L Arachis hypogaea HOM05D001382 ORTHO05D001266 7.6e-06 55.1 170 29.4
arahy.Tifrunner.gnm1.ann1.MLQ69B Arachis hypogaea HOM05D001382 ORTHO05D001266 7.6e-06 55.1 170 29.4
CAN.G78.146 Capsicum annuum HOM05D001109 ORTHO05D001051 7.6e-06 55.1 161 26.7
Glyma.19G252000 Glycine max HOM05D001109 ORTHO05D001051 7.6e-06 55.1 164 29.3
Medtr8g432370 Medicago truncatula HOM05D002113 ORTHO05D002124 7.6e-06 55.1 96 29.2


User provided reference genes

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