Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 0.0e+00 1666.0 808 100.0
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 9.3e-310 1066.6 812 65.9
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 3.0e-308 1061.6 795 67.0
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 2.1e-306 1055.4 739 70.5
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 1.3e-300 1036.2 803 65.5
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 2.8e-298 1028.5 851 62.0
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 5.3e-297 1024.2 846 62.4
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 1.1e-286 989.9 763 64.7
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 6.1e-285 984.2 822 61.6
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 8.5e-279 963.8 781 62.1
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 6.7e-276 954.1 763 62.4
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 6.5e-271 937.6 784 60.3
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.5e-270 936.4 775 60.4
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 1.5e-270 936.4 932 55.0
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 3.2e-270 935.3 773 61.3
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 3.2e-270 935.3 839 59.6
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 9.4e-270 933.7 742 63.2
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 6.8e-268 927.5 766 60.4
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.2e-267 926.8 762 61.0
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 2.6e-267 925.6 756 62.4
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 4.8e-266 921.4 726 63.6
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 6.3e-266 921.0 795 58.4
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.1e-265 918.7 807 59.2
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 3.1e-265 918.7 778 60.2
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 1.6e-264 916.4 772 59.3
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 3.5e-264 915.2 727 61.2
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.6e-261 906.4 793 59.5
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.6e-261 906.4 742 61.2
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 6.1e-261 904.4 769 59.3
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.3e-260 902.5 728 60.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 5.2e-260 901.4 787 57.6
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 9.8e-259 897.1 714 64.8
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.7e-258 896.3 805 56.8
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 3.7e-258 895.2 782 57.4
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.1e-257 893.6 695 62.6
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 2.4e-257 892.5 728 60.2
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 3.1e-257 892.1 800 58.2
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.2e-256 890.2 730 60.8
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 5.9e-256 887.9 663 65.0
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.3e-255 886.7 811 58.8
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 2.3e-255 885.9 669 64.3
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.1e-254 883.6 692 62.0
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.5e-254 883.2 715 61.3
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 9.5e-254 880.6 728 59.6
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 9.5e-254 880.6 755 58.8
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.1e-253 879.4 757 59.0
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 6.1e-253 877.9 672 62.9
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 1.4e-252 876.7 741 59.8
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 2.3e-252 875.9 787 57.1
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 4.0e-252 875.2 759 59.4
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 6.8e-252 874.4 672 63.8
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 6.8e-252 874.4 675 62.5
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 8.9e-252 874.0 745 59.5
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 1.3e-250 870.2 781 57.0
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.6e-248 861.7 790 57.6
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.3e-247 860.1 741 58.8
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 2.9e-247 859.0 638 63.2
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.8e-244 849.7 664 61.9
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 4.0e-244 848.6 669 61.9
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 2.6e-243 845.9 746 57.1
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 9.8e-243 844.0 639 63.8
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.6e-240 836.6 727 58.6
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 1.3e-239 833.6 627 64.9
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 3.9e-239 832.0 1055 44.5
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 5.0e-239 831.6 600 66.2
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.2e-237 827.0 792 54.7
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.6e-235 819.3 747 56.0
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.6e-235 819.3 562 73.0
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 4.4e-235 818.5 588 65.5
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 1.9e-233 813.1 651 61.9
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.5e-230 802.7 647 61.5
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.9e-225 786.6 595 63.0
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 7.1e-225 784.6 628 61.8
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 2.7e-224 782.7 634 64.0
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.0e-223 780.8 595 63.0
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.6e-221 773.5 775 54.1
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.6e-219 764.6 769 54.1
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.4e-212 743.0 548 63.9
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.1e-206 724.2 509 68.2
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 8.1e-205 718.0 613 60.2
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.1e-204 717.6 830 51.0
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.9e-204 714.9 575 60.5
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 3.0e-199 699.5 754 50.0
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.7e-199 698.4 588 59.7
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.8e-197 693.0 671 55.0
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 8.1e-197 691.4 587 58.8
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.1e-193 681.0 501 66.3
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 5.1e-191 672.2 637 54.2
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.9e-185 653.7 501 64.1
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.5e-182 644.0 766 47.1
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 8.2e-181 638.3 606 56.9
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.8e-180 637.1 576 58.2
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 5.5e-177 625.5 724 48.5
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.8e-172 610.5 475 62.3
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 7.5e-158 562.0 742 46.0
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 1.2e-155 554.7 687 47.7
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 4.9e-133 479.6 437 56.3
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 9.8e-126 455.3 724 39.8
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 7.8e-123 445.7 440 51.8
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.3e-106 391.0 324 61.7
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 1.5e-105 388.3 341 56.9
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 4.8e-88 330.1 209 70.8
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.0e-74 285.8 310 50.0
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 1.8e-71 275.0 320 49.4
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 5.0e-69 266.9 362 43.1
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.4e-68 265.4 338 48.8
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.3e-66 258.1 717 29.7
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.2e-64 251.5 256 51.2
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 4.1e-63 247.3 237 53.6
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 9.4e-60 236.1 247 50.2
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 1.6e-59 235.3 203 57.1
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 3.7e-40 171.0 211 45.5
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.4e-39 168.3 137 69.3
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 9.1e-39 166.4 91 79.1
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.7e-37 162.2 262 41.2
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.5e-36 158.3 115 67.0
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 3.2e-36 157.9 204 44.6
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 3.0e-34 151.4 168 44.0
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.5e-33 149.1 470 27.4
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 4.8e-32 144.1 558 23.1
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 2.7e-30 138.3 331 28.7
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 5.5e-28 130.6 74 87.8
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 2.1e-27 128.6 447 25.3
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 4.0e-26 124.4 143 50.3
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 7.5e-25 120.2 134 53.0
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.8e-24 118.2 90 71.1
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.3e-24 117.1 146 47.3
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 8.3e-24 116.7 232 34.1
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.8e-23 115.5 573 23.6
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 6.1e-19 100.5 59 76.3
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-18 99.0 84 64.3
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 8.0e-11 73.6 42 73.8
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.9e-07 62.4 197 27.4


User provided reference genes

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