Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 8.9e-185 650.2 345 100.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.2e-112 410.6 369 59.1
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 3.6e-109 399.1 349 61.6
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.4e-108 397.1 350 62.3
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 2.6e-107 392.9 346 59.8
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 5.7e-107 391.7 355 63.1
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 1.3e-106 390.6 322 68.0
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.5e-104 382.5 341 59.5
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.3e-103 380.6 353 61.2
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 8.5e-103 377.9 351 62.7
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 1.9e-102 376.7 319 61.8
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 5.5e-102 375.2 336 60.1
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 5.5e-102 375.2 349 59.9
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 9.4e-102 374.4 350 60.3
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.6e-101 373.6 351 60.7
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.7e-101 372.9 350 58.6
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 4.7e-101 372.1 390 53.3
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 6.1e-101 371.7 351 56.7
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 5.2e-100 368.6 388 54.9
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.2e-98 363.2 351 59.8
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 6.3e-98 361.7 377 52.5
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.4e-97 359.8 332 59.3
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 4.1e-97 359.0 352 55.7
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 9.1e-97 357.8 369 54.5
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 2.7e-96 356.3 353 55.5
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 5.5e-94 348.6 351 55.8
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 7.2e-94 348.2 360 54.4
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 1.4e-92 344.0 324 59.0
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 1.8e-92 343.6 329 56.5
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.0e-92 342.8 360 54.2
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 5.2e-92 342.0 351 57.5
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 2.6e-91 339.7 353 55.5
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 4.4e-91 339.0 393 50.6
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 4.4e-91 339.0 449 46.1
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.7e-90 337.0 344 53.5
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 3.7e-90 335.9 343 55.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 4.8e-90 335.5 452 46.5
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 2.0e-88 330.1 351 53.3
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 2.5e-86 323.2 482 44.0
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 2.5e-86 323.2 436 47.2
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 3.2e-86 322.8 357 53.2
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 7.2e-86 321.6 442 46.6
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 6.1e-85 318.5 437 45.1
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 8.0e-85 318.2 420 46.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.8e-84 317.0 283 65.7
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 8.8e-84 314.7 445 45.4
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.2e-83 314.3 432 44.2
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.2e-83 314.3 442 44.1
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 5.7e-83 312.0 454 43.0
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.3e-82 310.8 464 43.3
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.2e-82 310.1 454 42.7
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 6.3e-82 308.5 279 56.3
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.8e-81 307.0 516 40.3
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.1e-81 306.2 352 51.1
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 7.0e-81 305.1 430 46.7
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 9.2e-81 304.7 467 43.0
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.6e-80 303.9 352 54.5
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.3e-79 300.8 502 39.6
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.3e-79 300.8 470 41.3
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 5.0e-79 298.9 307 53.7
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 6.6e-79 298.5 480 40.0
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.5e-78 296.6 467 42.0
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 5.6e-78 295.4 441 42.4
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 7.3e-78 295.0 523 38.2
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 7.3e-78 295.0 502 39.2
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 9.5e-78 294.7 400 44.2
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 9.5e-78 294.7 327 51.4
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 2.1e-77 293.5 285 54.7
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.8e-77 293.1 481 40.7
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 8.9e-76 288.1 481 42.0
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 5.7e-75 285.4 409 44.7
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.7e-74 283.9 388 45.1
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.7e-74 283.9 388 45.1
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.9e-74 283.1 409 43.8
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 3.7e-74 282.7 496 39.3
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 6.4e-74 282.0 347 50.7
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.2e-73 279.6 496 39.1
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 4.1e-73 279.3 509 39.1
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 5.4e-73 278.9 482 39.4
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.2e-73 278.1 490 38.8
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.6e-72 277.3 431 43.4
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 2.0e-72 276.9 408 43.4
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.0e-72 276.9 500 38.6
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 3.5e-72 276.2 410 42.7
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 4.6e-72 275.8 433 41.6
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 5.9e-72 275.4 495 38.4
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 7.8e-72 275.0 420 43.1
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.3e-71 274.2 473 39.5
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.3e-71 273.5 329 51.4
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.1e-70 271.2 433 40.6
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.5e-70 270.0 407 42.5
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 8.0e-69 265.0 456 38.2
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 3.1e-68 263.1 425 42.4
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 5.2e-68 262.3 453 39.1
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 8.9e-68 261.5 491 37.9
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 8.9e-68 261.5 411 40.9
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.6e-64 250.8 495 38.4
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 4.6e-64 249.2 454 39.0
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 7.8e-64 248.4 307 45.9
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.7e-63 247.3 401 41.1
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 3.0e-63 246.5 345 43.8
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 3.9e-63 246.1 446 37.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.1e-62 244.6 447 37.8
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 1.9e-62 243.8 440 37.7
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 2.5e-62 243.4 409 40.3
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 2.1e-61 240.4 578 32.2
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 8.1e-61 238.4 310 46.1
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 7.5e-59 231.9 495 34.9
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 2.2e-58 230.3 374 41.4
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 8.3e-58 228.4 495 33.7
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 8.3e-58 228.4 495 33.7
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.4e-57 227.6 583 31.2
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.1e-57 226.1 477 34.2
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 2.1e-56 223.8 447 36.0
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 5.1e-55 219.2 456 36.0
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 3.3e-54 216.5 368 40.8
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 1.2e-53 214.5 314 43.0
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.4e-52 211.1 175 63.4
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.3e-47 193.7 138 66.7
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 9.6e-46 188.3 151 66.2
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.2e-44 182.6 324 42.0
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.2e-42 177.2 145 62.8
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 8.7e-39 165.2 364 34.3
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.4e-33 147.9 442 30.3
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 9.3e-33 145.2 109 66.1
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.3e-31 141.4 221 43.9
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.9e-30 137.5 165 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 2.9e-26 123.6 353 29.7
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.6e-19 100.5 75 64.0
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.6e-16 91.3 327 28.1
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.1e-14 85.1 77 54.5
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.4e-12 77.4 53 56.6
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 5.3e-12 76.3 76 47.4


User provided reference genes

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