Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.4e-51 206.1 106 100.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 8.3e-25 117.1 110 59.1
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.0e-23 112.5 90 64.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 6.0e-23 110.9 106 58.5
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.5e-21 105.5 109 56.9
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.6e-20 101.7 114 51.8
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.2e-20 100.9 87 64.4
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.4e-19 99.8 88 64.8
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.3e-19 99.0 86 64.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.0e-19 98.2 84 65.5
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.0e-19 98.2 87 65.5
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 6.8e-19 97.4 91 61.5
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 8.9e-19 97.1 93 59.1
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.9e-19 97.1 86 65.1
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 8.9e-19 97.1 87 63.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.2e-18 96.7 93 59.1
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.5e-18 96.3 97 51.5
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 2.0e-18 95.9 96 54.2
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.6e-18 95.5 98 53.1
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.6e-18 95.5 87 63.2
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.8e-18 94.4 85 64.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.5e-18 94.0 84 61.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 7.5e-18 94.0 116 53.4
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 7.5e-18 94.0 105 53.3
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.3e-17 93.2 91 54.9
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.7e-17 92.8 92 57.6
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.2e-17 92.4 91 54.9
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-17 92.4 84 60.7
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.9e-17 92.0 85 63.5
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.9e-17 91.3 91 54.9
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 6.4e-17 90.9 86 61.6
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.1e-16 90.1 93 54.8
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.1e-16 90.1 91 56.0
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.4e-16 89.7 85 62.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.4e-16 89.7 84 59.5
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.2e-16 88.6 87 55.2
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.2e-16 88.6 80 55.0
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.1e-16 88.2 111 54.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.1e-16 88.2 105 51.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.1e-16 88.2 94 55.3
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 5.4e-16 87.8 91 54.9
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.1e-16 87.4 85 61.2
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.2e-15 86.7 90 53.3
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.6e-15 86.3 105 48.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.6e-15 86.3 90 55.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.5e-15 85.1 88 54.5
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 6.0e-15 84.3 86 55.8
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.0e-14 83.6 111 50.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.7e-14 82.8 91 53.8
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.6e-14 80.5 90 53.3
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.3e-13 78.2 81 58.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.1e-12 75.9 85 50.6
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.1e-12 75.9 109 48.6
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.1e-12 75.9 108 48.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.8e-12 75.5 69 62.3
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.8e-12 75.5 72 56.9
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 6.2e-12 74.3 94 46.8
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.8e-11 72.8 120 42.5
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-11 72.8 79 57.0
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.1e-11 72.0 74 56.8
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.0e-11 71.6 100 45.0
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 4.0e-11 71.6 90 46.7
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 6.8e-11 70.9 81 54.3
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 8.9e-11 70.5 68 60.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.5e-10 69.7 83 53.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 2.0e-10 69.3 82 52.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 2.6e-10 68.9 101 41.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.4e-10 68.6 72 56.9
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.4e-10 68.6 92 45.7
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 7.6e-10 67.4 94 40.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 9.9e-10 67.0 89 42.7
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.3e-09 66.6 91 50.5
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.7e-09 66.2 101 43.6
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 63 57.1
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.7e-09 66.2 83 48.2
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-09 65.9 88 46.6
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.9e-09 65.5 82 45.1
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 3.8e-09 65.1 87 47.1
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 6.4e-09 64.3 86 50.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.4e-09 64.3 96 42.7
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.4e-09 64.3 76 52.6
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.1e-08 63.5 74 52.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-08 63.5 76 51.3
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-08 63.5 84 48.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 45.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 45.5
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 43.2
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 43.2
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 45.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 43.2
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 43.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 43.2
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.4e-08 63.2 63 57.1
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 74 51.4
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 95 43.2
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.4e-08 62.4 88 46.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.4e-08 62.4 95 43.2
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.4e-08 62.4 95 43.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.2e-08 62.0 88 45.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.2e-08 62.0 89 47.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.2e-08 62.0 88 44.3
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 4.1e-08 61.6 88 42.0
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 4.1e-08 61.6 88 42.0
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 4.1e-08 61.6 72 50.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.1e-08 61.6 81 44.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.4e-08 61.2 91 45.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.4e-08 61.2 102 41.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 5.4e-08 61.2 86 44.2
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 7.1e-08 60.8 88 44.3
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 7.1e-08 60.8 88 43.2
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.1e-08 60.8 85 44.7
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 9.2e-08 60.5 54 53.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.1 88 42.0
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-07 60.1 88 42.0
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-07 60.1 88 42.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.2e-07 60.1 83 47.0
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.2e-07 60.1 90 42.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-07 59.7 88 42.0
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.6e-07 59.7 58 60.3
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 46 63.0
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.7e-07 58.9 79 49.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.7e-07 58.9 90 40.0
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.7e-07 58.9 85 45.9
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.7e-07 58.9 82 46.3
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 4.6e-07 58.2 83 47.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.6e-07 58.2 76 44.7
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 4.6e-07 58.2 78 46.2
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 6.0e-07 57.8 78 43.6
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-07 57.8 79 49.4
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-07 57.8 88 43.2
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.0e-07 57.8 103 39.8
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.8e-07 57.4 82 42.7
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 7.8e-07 57.4 95 42.1
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.8e-07 57.4 90 45.6
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.0e-06 57.0 66 51.5
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.3e-06 56.6 93 41.9
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.3e-06 56.6 77 46.8
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.3e-06 56.6 98 39.8
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-06 56.2 99 39.4
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.7e-06 56.2 57 52.6
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 3.0e-06 55.5 84 42.9
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 3.0e-06 55.5 50 54.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 83 39.8
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 6.6e-06 54.3 53 49.1
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 8.6e-06 53.9 45 64.4
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 8.6e-06 53.9 73 45.2


User provided reference genes

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