Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.0e-124 449.1 234 100.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.9e-82 309.7 240 70.8
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 4.3e-82 308.5 240 70.8
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.6e-81 306.6 237 70.5
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.1e-81 306.2 244 68.4
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 6.9e-80 301.2 240 69.2
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.5e-79 300.1 229 71.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.8e-78 295.4 251 67.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.9e-78 295.0 236 70.8
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.4e-77 292.7 246 65.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.4e-77 292.7 236 70.3
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.2e-77 292.0 242 68.6
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 4.2e-77 292.0 271 62.4
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 2.5e-74 282.7 234 67.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.8e-73 279.3 234 65.8
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.1e-72 277.3 244 65.6
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.4e-72 276.9 244 66.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.8e-72 276.6 234 66.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.2e-71 273.9 237 67.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-71 273.9 236 67.4
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.2e-71 273.9 254 64.6
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 5.8e-71 271.6 234 67.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.3e-70 270.4 244 64.8
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 6.4e-70 268.1 238 66.0
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 8.4e-70 267.7 185 77.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.9e-69 266.5 234 65.4
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.9e-69 266.5 234 65.4
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.5e-69 265.0 239 64.0
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 7.1e-69 264.6 232 65.5
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 9.3e-69 264.2 237 64.1
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.1e-68 263.1 248 62.1
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 3.5e-68 262.3 246 62.6
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.5e-68 262.3 239 64.9
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.0e-67 260.8 238 60.9
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.0e-67 260.8 239 62.8
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.8e-67 260.0 192 70.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.8e-67 260.0 234 65.0
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 3.0e-67 259.2 242 62.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 3.9e-67 258.8 189 73.0
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.1e-67 258.5 244 61.1
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 8.7e-67 257.7 235 64.7
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.5e-66 256.9 239 61.1
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.5e-66 256.1 238 61.3
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 4.3e-66 255.4 234 64.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 5.6e-66 255.0 253 58.9
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.3e-65 253.8 235 62.6
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.6e-65 253.4 239 60.3
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.6e-65 253.4 240 60.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 3.7e-65 252.3 248 60.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 4.8e-65 251.9 238 62.6
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.4e-64 249.6 235 60.0
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.1e-64 249.2 235 60.0
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.1e-64 249.2 232 63.4
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 5.3e-64 248.4 256 57.8
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 6.9e-64 248.1 234 63.7
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 9.0e-64 247.7 232 63.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.2e-63 247.3 190 69.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.4e-63 245.7 232 62.9
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 4.5e-63 245.4 234 63.7
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.5e-63 245.4 226 64.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 7.6e-63 244.6 235 60.9
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.3e-62 243.8 168 76.2
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.3e-62 243.8 214 65.0
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 6.5e-62 241.5 227 62.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.5e-62 241.5 235 60.0
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 6.5e-62 241.5 188 70.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-61 240.4 195 68.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.5e-61 239.6 242 59.1
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 5.5e-61 238.4 187 69.5
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 9.3e-61 237.7 186 68.8
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.1e-60 236.5 238 56.7
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 3.5e-60 235.7 232 58.2
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.9e-60 234.6 233 61.4
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.9e-60 234.6 233 61.4
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.0e-59 234.2 171 73.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 3.0e-59 232.6 238 55.5
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 3.0e-59 232.6 239 58.6
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.9e-59 232.3 239 58.6
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 5.1e-59 231.9 240 56.2
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 6.7e-59 231.5 191 65.4
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 8.7e-59 231.1 240 55.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 8.7e-59 231.1 184 70.1
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.1e-58 230.7 238 57.1
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.1e-58 230.7 238 57.1
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.5e-58 230.3 193 63.2
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.5e-58 230.3 183 66.7
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.9e-58 229.9 238 56.7
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 239 58.2
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.9e-58 229.9 183 67.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.5e-58 229.6 138 84.8
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 4.3e-58 228.8 237 55.3
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.3e-57 227.3 274 53.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.3e-57 227.3 183 66.1
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.6e-57 226.9 183 65.6
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.7e-57 225.7 184 67.4
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.1e-56 224.2 244 54.1
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.1e-56 222.2 216 57.9
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.2e-55 220.7 240 53.3
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.2e-55 220.7 239 54.0
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.1e-53 214.2 219 59.8
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 3.2e-53 212.6 184 63.6
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.8e-51 206.8 177 62.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.8e-51 206.8 236 53.0
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.3e-49 200.7 157 67.5
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.7e-49 199.1 153 69.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.4e-48 197.2 260 51.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.4e-45 187.2 132 74.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.0e-43 179.5 148 64.2
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.8e-43 177.9 238 47.5
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.5e-42 177.2 125 76.0
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.7e-42 174.5 171 57.9
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 5.9e-39 165.2 148 60.1
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.7e-33 147.1 195 47.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.2e-31 141.0 215 44.7
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.6e-31 140.6 256 41.4
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 3.5e-31 139.4 208 42.8
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.7e-31 138.3 151 55.0
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.0e-30 137.9 104 65.4
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.2e-30 136.7 104 65.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 3.8e-30 136.0 205 42.9
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 6.5e-30 135.2 205 42.4
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-29 134.4 104 63.5
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 3.2e-29 132.9 211 41.2
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 4.7e-28 129.0 123 54.5
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 6.1e-28 128.6 228 39.9
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.4e-27 127.5 97 63.9
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 6.7e-27 125.2 110 58.2
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 4.1e-24 115.9 97 57.7
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 7.0e-24 115.2 97 67.0
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.0e-22 109.0 73 71.2
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 2.5e-21 106.7 153 45.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 6.1e-20 102.1 160 42.5
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.0e-20 101.7 82 63.4
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-18 97.8 171 36.8
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 9.1e-16 88.2 238 31.9
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-14 84.0 129 41.9
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 4.2e-13 79.3 122 43.4
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.1e-12 77.0 141 36.9
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.4e-08 62.4 95 43.2
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.6e-07 60.8 51 64.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 3.8e-06 56.2 53 62.3


User provided reference genes

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