Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 1.2e-35 152.5 70 100.0
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 4.2e-33 144.1 66 97.0
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 2.3e-31 138.3 66 92.4
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 5.1e-31 137.1 66 92.4
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 6.7e-31 136.7 66 92.4
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 6.7e-31 136.7 66 92.4
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.1e-30 136.0 66 89.4
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.1e-30 136.0 66 90.9
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.5e-30 135.6 66 89.4
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.5e-30 135.6 69 87.0
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.9e-30 135.2 66 92.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.9e-30 135.2 66 90.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.9e-30 135.2 66 90.9
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 2.5e-30 134.8 66 89.4
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.5e-30 134.8 66 90.9
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 2.5e-30 134.8 66 87.9
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.3e-30 134.4 64 93.8
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.3e-30 134.4 64 93.8
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.3e-30 134.4 66 89.4
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 4.3e-30 134.0 66 89.4
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 4.3e-30 134.0 66 90.9
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 4.3e-30 134.0 66 87.9
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.7e-30 133.7 66 89.4
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.7e-30 133.7 66 89.4
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.7e-30 133.7 66 89.4
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 5.7e-30 133.7 66 90.9
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 5.7e-30 133.7 66 87.9
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 7.4e-30 133.3 66 87.9
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 7.4e-30 133.3 66 89.4
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 7.4e-30 133.3 66 89.4
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 7.4e-30 133.3 66 89.4
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 9.7e-30 132.9 64 92.2
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 87.9
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 87.9
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 89.4
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 87.9
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 87.9
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 89.4
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 89.4
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 9.7e-30 132.9 64 92.2
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 87.9
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 9.7e-30 132.9 66 87.9
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.7e-29 132.1 66 89.4
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.7e-29 132.1 66 89.4
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 1.7e-29 132.1 64 92.2
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.7e-29 132.1 64 92.2
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.7e-29 132.1 64 92.2
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.2e-29 131.7 66 86.4
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 2.2e-29 131.7 66 86.4
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 2.2e-29 131.7 66 86.4
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.8e-29 131.3 66 86.4
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.8e-29 131.3 66 89.4
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.7e-29 131.0 66 87.9
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.7e-29 131.0 66 86.4
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.7e-29 131.0 65 86.2
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 84.8
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 84.8
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 84.8
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 89.4
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 87.9
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 87.9
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 4.8e-29 130.6 66 86.4
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 6.3e-29 130.2 66 84.8
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 6.3e-29 130.2 66 84.8
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 8.2e-29 129.8 67 86.6
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 8.2e-29 129.8 66 86.4
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.1e-28 129.4 66 83.3
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.1e-28 129.4 66 87.9
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.1e-28 129.4 66 86.4
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 1.1e-28 129.4 66 84.8
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.4e-28 129.0 65 84.6
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.4e-28 129.0 66 86.4
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.4e-28 129.0 66 86.4
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.4e-28 129.0 66 84.8
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 1.8e-28 128.6 65 84.6
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.8e-28 128.6 66 83.3
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.8e-28 128.6 66 83.3
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.8e-28 128.6 66 83.3
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.4e-28 128.3 66 86.4
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.4e-28 128.3 66 86.4
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.4e-28 128.3 66 86.4
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.4e-28 128.3 66 86.4
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.4e-28 128.3 66 86.4
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 2.4e-28 128.3 66 84.8
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 84.8
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 83.3
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 3.1e-28 127.9 64 89.1
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 84.8
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.1e-28 127.9 66 86.4
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 4.1e-28 127.5 66 86.4
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.1e-28 127.5 66 86.4
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 6.9e-28 126.7 66 86.4
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 1.5e-27 125.6 64 85.9
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.5e-27 125.6 66 84.8
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.5e-27 125.6 66 84.8
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.5e-27 125.6 66 84.8
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.6e-27 124.8 66 81.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.0e-26 122.9 66 78.8
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.7e-26 122.1 83 68.7
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.7e-26 122.1 64 79.7
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 8.5e-26 119.8 65 76.9
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.4e-25 119.0 78 73.1
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.9e-25 118.6 87 66.7
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 2.5e-25 118.2 64 79.7
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 5.5e-25 117.1 69 76.8
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 7.2e-25 116.7 61 82.0
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.2e-24 115.9 90 61.1
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 3.7e-21 104.4 61 72.1
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 6.3e-21 103.6 101 50.5
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.4e-20 102.4 63 71.4
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.4e-20 101.7 61 68.9
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.1e-20 100.9 61 70.5
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 5.0e-18 94.0 64 60.9
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.6e-16 87.8 61 59.0
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 8.0e-16 86.7 43 86.0
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.8e-15 85.5 45 82.2
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 3.9e-15 84.3 44 77.3
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 3.9e-15 84.3 42 88.1
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 8.8e-15 83.2 66 62.1
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 2.6e-14 81.6 57 64.9
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.6e-14 81.6 44 81.8
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 4.4e-14 80.9 42 78.6
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 6.7e-07 57.0 25 96.0
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 5.7e-06 53.9 27 88.9


User provided reference genes

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