Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 8.6e-224 780.0 400 100.0
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.6e-190 669.5 393 85.0
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 6.5e-187 657.5 390 83.3
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 8.4e-187 657.1 396 83.1
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.4e-186 656.4 390 83.6
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 4.2e-186 654.8 390 82.8
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 7.1e-186 654.1 390 83.3
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 9.3e-186 653.7 395 83.3
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.6e-185 652.9 388 83.5
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 6.0e-185 651.0 398 82.4
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.5e-183 646.4 396 82.3
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.5e-183 646.4 396 82.3
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.9e-183 646.0 394 81.5
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 7.4e-183 644.0 394 81.0
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 2.1e-182 642.5 396 82.1
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 5.3e-181 637.9 390 82.3
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 5.0e-179 631.3 384 83.3
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 1.2e-177 626.7 386 80.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.3e-176 622.5 388 79.6
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 5.1e-176 621.3 388 79.6
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 2.5e-175 619.0 390 79.2
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.8e-174 614.8 383 81.7
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 8.2e-174 614.0 395 79.2
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 3.1e-173 612.1 388 79.1
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 5.3e-173 611.3 388 79.9
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.0e-171 607.1 406 75.9
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.2e-171 605.9 392 77.8
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 2.2e-171 605.9 416 74.5
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 8.5e-171 604.0 385 78.7
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 8.5e-171 604.0 387 78.6
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.2e-170 601.7 400 76.5
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.5e-170 601.3 392 77.3
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.2e-169 600.1 397 75.6
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.7e-169 599.0 394 76.9
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 4.6e-169 598.2 388 76.8
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 4.6e-169 598.2 382 78.0
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.0e-168 597.0 383 78.3
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 3.0e-168 595.5 394 76.6
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.1e-168 594.7 383 77.3
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 5.1e-168 594.7 394 76.4
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 6.7e-168 594.3 383 78.1
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 2.0e-167 592.8 357 81.5
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 4.3e-167 591.7 390 75.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 4.3e-167 591.7 387 75.5
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 5.7e-167 591.3 397 74.8
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 9.7e-167 590.5 390 76.9
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.3e-166 590.1 400 73.2
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.8e-166 589.0 401 75.1
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 3.7e-166 588.6 340 85.0
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 8.2e-166 587.4 388 76.5
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 2.4e-165 585.9 401 74.1
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 3.1e-165 585.5 400 72.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 3.1e-165 585.5 389 75.6
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.9e-165 584.3 388 76.3
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 6.9e-165 584.3 391 76.0
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.2e-164 583.6 394 75.6
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.2e-164 583.6 388 76.0
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.2e-164 583.6 402 75.1
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.0e-164 582.8 389 76.3
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 3.4e-164 582.0 402 74.9
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 2.9e-163 578.9 371 77.4
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 3.2e-162 575.5 372 76.1
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 4.2e-162 575.1 399 73.9
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 9.4e-162 573.9 402 72.4
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 3.9e-160 568.5 391 73.4
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 8.8e-160 567.4 391 73.7
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 5.7e-159 564.7 372 76.1
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 7.4e-159 564.3 386 73.8
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.7e-158 563.1 397 72.3
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 2.2e-158 562.8 369 75.6
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 2.2e-158 562.8 391 73.4
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 4.1e-157 558.5 364 77.2
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 7.0e-157 557.8 389 73.3
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 2.0e-156 556.2 404 73.0
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 4.5e-156 555.1 391 73.7
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 3.8e-155 552.0 372 73.7
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 5.0e-155 551.6 401 72.1
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.1e-154 550.4 373 76.4
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 2.1e-153 546.2 399 69.9
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 4.7e-153 545.0 403 69.2
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 6.1e-153 544.7 499 60.7
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.8e-152 543.1 393 70.5
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 2.3e-152 542.7 396 71.0
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 3.0e-152 542.3 395 69.9
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 5.2e-152 541.6 402 69.2
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 8.8e-152 540.8 399 69.7
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 8.8e-152 540.8 403 68.7
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.1e-151 540.4 372 72.0
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.1e-151 540.4 353 75.1
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.5e-151 540.0 392 68.9
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 2.6e-151 539.3 399 69.4
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 5.3e-149 531.6 394 68.3
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.1e-146 523.9 362 72.9
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.8e-144 516.5 397 68.3
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 5.7e-143 511.5 400 66.5
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 5.7e-143 511.5 395 65.6
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 3.5e-140 502.3 306 80.1
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 1.0e-139 500.7 306 79.4
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.0e-136 490.7 337 70.6
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.3e-136 489.6 452 60.4
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 6.3e-134 481.5 283 82.3
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.7e-131 473.4 345 66.4
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.1e-125 454.1 377 63.1
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 1.1e-109 401.0 337 57.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 2.0e-79 300.4 221 71.5
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 9.9e-79 298.1 299 56.9
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 9.3e-77 291.6 278 58.3
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 6.2e-73 278.9 215 63.7
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.1e-72 278.1 178 77.5
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.9e-69 267.3 160 78.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.1e-65 253.8 223 61.9
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 8.2e-65 251.9 203 59.6
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 5.7e-58 229.2 260 51.9
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 7.7e-55 218.8 234 53.4
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 1.0e-51 208.4 167 67.7
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 3.8e-46 189.9 205 51.2
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 7.9e-44 182.2 134 67.9
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.0e-43 181.8 110 77.3
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.8e-43 178.7 110 75.5
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 7.0e-40 169.1 100 81.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.9e-38 163.7 110 71.8
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.1e-37 161.8 137 65.7
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 3.2e-37 160.2 352 32.4
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 3.2e-37 160.2 351 33.6
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.0e-35 153.3 287 33.1
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.8e-33 147.1 166 52.4
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.7e-33 146.7 166 52.4
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 2.7e-31 140.6 266 31.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 4.5e-23 113.2 78 73.1
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 2.9e-22 110.5 211 31.3
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 3.8e-22 110.2 258 31.0
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.1e-20 104.4 65 78.5
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 3.0e-19 100.5 62 75.8
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.0e-19 100.5 60 80.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.5e-18 95.9 70 65.7
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 2.8e-17 94.0 88 62.5
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 4.1e-16 90.1 67 67.2
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.2e-16 89.0 53 81.1
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 1.2e-15 88.6 55 78.2
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.7e-15 87.4 52 80.8
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 3.5e-15 87.0 69 63.8
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 5.9e-15 86.3 50 78.0
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 5.9e-15 86.3 50 82.0
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 5.9e-15 86.3 49 79.6
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.0e-14 85.5 80 60.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.0e-14 85.5 80 60.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 1.0e-14 85.5 51 74.5
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 2.9e-14 84.0 214 30.4
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.8e-14 83.6 52 78.8
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.9e-13 81.3 51 66.7
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.2e-12 78.6 48 79.2
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.2e-12 78.6 48 79.2
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 4.4e-10 70.1 49 69.4
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 4.9e-09 66.6 40 77.5
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 5.0e-06 56.6 75 46.7


User provided reference genes

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