Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12820 Coffea canephora HOM05D007612 ORTHO05D009468 4.6e-115 417.9 216 100.0
Sopen08g027460 Solanum pennellii HOM05D007612 ORTHO05D009468 7.3e-68 261.2 205 65.4
Solyc08g078990.3 Solanum lycopersicum HOM05D007612 ORTHO05D009468 2.1e-67 259.6 205 64.9
Nitab4.5_0000312g0380 Nicotiana tabacum HOM05D007612 ORTHO05D009468 1.5e-65 253.4 194 67.0
Oeu026497.1 Olea europaea HOM05D007612 ORTHO05D009468 2.7e-62 242.7 228 62.7
MSTRG.1941 Avicennia marina HOM05D007612 ORTHO05D009468 3.5e-62 242.3 225 60.4
Nitab4.5_0010169g0020 Nicotiana tabacum HOM05D007612 ORTHO05D009468 1.0e-61 240.7 186 66.1
Migut.E01671 Erythranthe guttata HOM05D007612 ORTHO05D009468 3.0e-61 239.2 229 59.8
CAN.G1217.8 Capsicum annuum HOM05D007612 ORTHO05D009468 3.9e-61 238.8 212 59.0
SalBow1G3910 Salvia bowleyana HOM05D007612 ORTHO05D009468 4.0e-58 228.8 208 62.5
Migut.E00853 Erythranthe guttata HOM05D007612 ORTHO05D009468 2.6e-57 226.1 229 58.5
unitig_26.g9270 Utricularia gibba HOM05D007612 ORTHO05D009468 2.6e-57 226.1 223 56.1
Hma1.2p1_0753F.1_g212875 Hydrangea macrophylla HOM05D007612 ORTHO05D009468 1.2e-54 217.2 222 55.0
Lsat_1_v5_gn_6_2640 Lactuca sativa HOM05D007612 ORTHO05D009468 2.1e-54 216.5 209 56.0
Hma1.2p1_0753F.1_g212900 Hydrangea macrophylla HOM05D007612 ORTHO05D009468 1.3e-53 213.8 222 54.1
Rhsim03G0239900 Rhododendron simsii HOM05D007612 ORTHO05D009468 1.9e-52 209.9 222 53.6
HanXRQChr02g0049471 Helianthus annuus HOM05D007612 ORTHO05D009468 2.3e-50 203.0 203 56.2
Lj2C213T3 Lonicera japonica HOM05D007612 ORTHO05D009468 1.5e-49 200.3 206 54.9
DCAR_028126 Daucus carota HOM05D007612 ORTHO05D009468 1.5e-44 183.7 203 53.2
QL12p013034 Quercus lobata HOM05D007612 ORTHO05D009468 3.6e-43 179.1 191 55.5
DCAR_004931 Daucus carota HOM05D007612 ORTHO05D009468 6.2e-43 178.3 203 51.7
TAR375G1005 Trochodendron aralioides HOM05D007612 ORTHO05D009468 1.1e-42 177.6 203 50.7
Dinv21611 Davidia involucrata HOM05D007612 ORTHO05D009468 1.8e-42 176.8 148 62.2
FAN08G1107 Fragaria x ananassa HOM05D007612 ORTHO05D009468 3.4e-41 172.6 198 52.0
Sc01g0009390 Simmondsia chinensis HOM05D007612 ORTHO05D009468 1.3e-40 170.6 203 52.2
FAN13G1385 Fragaria x ananassa HOM05D007612 ORTHO05D009468 1.1e-39 167.5 193 52.3
CDE12G0540 Ceratophyllum demersum HOM05D001278 ORTHO05D009468 4.6e-38 162.2 203 46.3
CiPaw.12G107900 Carya illinoinensis HOM05D007612 ORTHO05D009468 1.9e-36 156.8 202 50.5
Ah.02g116870 Amaranthus hybridus HOM05D007612 ORTHO05D009468 4.3e-36 155.6 199 47.7
CANSAT21G0050 Cannabis sativa HOM05D007612 ORTHO05D009468 1.3e-35 154.1 195 47.2
Cfa012762 Carpinus fangiana HOM05D007612 ORTHO05D009468 1.6e-35 153.7 205 49.8
FvH4_5g00170 Fragaria vesca HOM05D007612 ORTHO05D009468 1.6e-35 153.7 214 44.9
TWI81G0615 Tripterygium wilfordii HOM05D007612 ORTHO05D009468 6.2e-35 151.8 196 48.5
FAN18G2878 Fragaria x ananassa HOM05D007612 ORTHO05D009468 2.4e-34 149.8 214 44.9
Atru.chr9.1343 Acer truncatum HOM05D007612 ORTHO05D009468 4.0e-34 149.1 214 46.3
ATR0763G178 Amborella trichopoda HOM05D007612 ORTHO05D009468 9.0e-34 147.9 224 45.1
SEGI_06780 Sequoiadendron giganteum HOM05D007612 ORTHO05D009468 5.8e-33 145.2 201 42.8
Potri.003G111700 Populus trichocarpa HOM05D007612 ORTHO05D009468 3.8e-32 142.5 219 42.9
Manes.01G077500 Manihot esculenta HOM05D007612 ORTHO05D009468 1.1e-31 141.0 209 42.1
Os02g0661800 Oryza sativa ssp. japonica HOM05D007612 ORTHO05D009468 7.1e-31 138.3 204 44.1
Duzib205G1442 Durio zibethinus HOM05D007612 ORTHO05D009468 9.3e-31 137.9 205 45.4
RcHm_v2.0_Chr7g0202701 Rosa chinensis HOM05D007612 ORTHO05D009468 1.2e-30 137.5 214 41.6
Thecc.03G255500 Theobroma cacao HOM05D007612 ORTHO05D009468 1.2e-30 137.5 213 44.1
Cpa.g.sc29.136 Carica papaya HOM05D007612 ORTHO05D009468 1.6e-30 137.1 222 39.6
Mapoly0056s0139 Marchantia polymorpha HOM05D007612 ORTHO05D009468 2.1e-30 136.7 214 39.7
MD06G1062400 Malus domestica HOM05D007612 ORTHO05D009468 3.5e-30 136.0 205 43.4
Ciclev10022424m.g Citrus clementina HOM05D007612 ORTHO05D009468 6.0e-30 135.2 200 43.5
PGSC0003DMG400004745 Solanum tuberosum HOM05D007612 ORTHO05D009468 6.0e-30 135.2 108 63.0
Prupe.5G073800 Prunus persica HOM05D007612 ORTHO05D009468 1.0e-29 134.4 214 40.7
Glyma.05G056700 Glycine max HOM05D007612 ORTHO05D009468 1.8e-29 133.7 222 40.5
Glyma.17G139100 Glycine max HOM05D007612 ORTHO05D009468 1.8e-29 133.7 218 40.4
Lj4g0014551 Lotus japonicus HOM05D007612 ORTHO05D009468 2.3e-29 133.3 220 40.5
Zm00001eb186700 Zea mays HOM05D007612 ORTHO05D009468 2.3e-29 133.3 203 42.9
SHI20264 Sapria himalayana HOM05D007612 ORTHO05D009468 6.7e-29 131.7 209 37.8
MD04G1086000 Malus domestica HOM05D007612 ORTHO05D009468 3.3e-28 129.4 213 41.3
EL10Ac5g13022 Beta vulgaris HOM05D007612 ORTHO05D009468 7.4e-28 128.3 124 53.2
PGR031G3722 Punica granatum HOM05D007612 ORTHO05D009468 7.4e-28 128.3 188 45.2
Pp3c11_1660 Physcomitrium patens HOM05D007612 ORTHO05D009468 1.3e-27 127.5 210 36.2
SEGI_35634 Sequoiadendron giganteum HOM05D007612 ORTHO05D009468 4.8e-27 125.6 201 38.8
SMO200G0174 Selaginella moellendorffii HOM05D007612 ORTHO05D009468 6.2e-27 125.2 171 45.0
Phvul.003G218300 Phaseolus vulgaris HOM05D007612 ORTHO05D009468 8.1e-27 124.8 222 38.7
Oeu007691.1 Olea europaea HOM05D007612 ORTHO05D009468 1.1e-26 124.4 210 40.5
Lalb_Chr05g0225591 Lupinus albus HOM05D007612 ORTHO05D009468 1.4e-26 124.0 216 38.0
SMO181G0010 Selaginella moellendorffii HOM05D007612 ORTHO05D009468 3.1e-26 122.9 164 45.1
arahy.Tifrunner.gnm1.ann1.5P7LY9 Arachis hypogaea HOM05D007612 ORTHO05D009468 2.6e-25 119.8 223 37.7
Medtr4g101420 Medicago truncatula HOM05D007612 ORTHO05D009468 2.6e-25 119.8 218 39.0
Psat4g070880 Pisum sativum HOM05D007612 ORTHO05D009468 2.6e-25 119.8 223 40.4
arahy.Tifrunner.gnm1.ann1.IY6VWR Arachis hypogaea HOM05D007612 ORTHO05D009468 3.4e-25 119.4 217 39.2
HPP92_022312 Vanilla planifolia HOM05D007612 ORTHO05D009468 3.4e-25 119.4 160 45.6
AT4G22550 Arabidopsis thaliana HOM05D007612 ORTHO05D009468 3.8e-24 115.9 209 35.9
THA.LOC104813682 Tarenaya hassleriana HOM05D007612 ORTHO05D009468 1.4e-23 114.0 217 36.9
Pp3c2_32240 Physcomitrium patens HOM05D007612 ORTHO05D009468 1.8e-21 107.1 189 34.9
Gohir.A12G219300 Gossypium hirsutum HOM05D007612 ORTHO05D009468 2.3e-21 106.7 203 39.9
Pp3c22_3050 Physcomitrium patens HOM05D007612 ORTHO05D009468 1.9e-20 103.6 179 35.8
Gorai.008G237400 Gossypium raimondii HOM05D007612 ORTHO05D009468 2.1e-19 100.1 195 40.0
Thhalv10027572m.g Eutrema salsugineum HOM05D007612 ORTHO05D009468 3.7e-19 99.4 220 33.2
Aa31LG9G10150 Aethionema arabicum HOM05D007612 ORTHO05D009468 1.4e-18 97.4 133 41.4
CBR_g29550 Chara braunii HOM05D007612 ORTHO05D009468 1.4e-18 97.4 200 35.0
Carub.0007s1876 Capsella rubella HOM05D007612 ORTHO05D009468 3.1e-18 96.3 197 35.0
BraA01t01329Z Brassica rapa HOM05D007612 ORTHO05D009468 4.0e-18 95.9 137 42.3
CARHR229440 Cardamine hirsuta HOM05D007612 ORTHO05D009468 5.3e-18 95.5 132 42.4
Sp7g20590 Schrenkiella parvula HOM05D007612 ORTHO05D009468 1.2e-17 94.4 135 39.3
Hma1.2p1_0753F.1_g212890 Hydrangea macrophylla HOM05D007612 ORTHO05D009468 1.5e-17 94.0 120 48.3
A01p13840 Brassica napus HOM05D007612 ORTHO05D009468 3.4e-17 92.8 137 41.6
C01p16860 Brassica napus HOM05D007612 ORTHO05D009468 4.5e-17 92.4 136 40.4
BolC1t01627H Brassica oleracea HOM05D007612 ORTHO05D009468 4.5e-17 92.4 136 40.4
AL7G31050 Arabidopsis lyrata HOM05D007612 ORTHO05D009468 1.3e-16 90.9 212 31.1
Oeu042243.1 Olea europaea HOM05D007612 ORTHO05D009468 2.2e-16 90.1 184 38.0
Sabra03G0077400 Salix brachista HOM05D007612 ORTHO05D009468 4.9e-16 89.0 113 44.2
PRCOL_00000794 Prasinoderma coloniale HOM05D007612 ORTHO05D009468 1.1e-15 87.8 184 35.3
BcaC09g51124 Brassica carinata HOM05D007612 ORTHO05D009468 2.7e-14 83.2 122 41.0
AUR62007488 Chenopodium quinoa HOM05D007612 ORTHO05D009468 3.0e-13 79.7 107 44.9
COL.COLO4_03562 Corchorus olitorius HOM05D007612 ORTHO05D009468 6.3e-11 72.0 88 46.6
TPR.G37688 Trifolium pratense HOM05D007612 ORTHO05D009468 1.5e-09 67.4 158 36.1
C03p84250 Brassica napus HOM05D007612 ORTHO05D009468 6.5e-08 62.0 95 41.1
ECA233G4971 Erigeron canadensis HOM05D001278 ORTHO05D001104 7.9e-06 55.1 44 65.9


User provided reference genes

Program Settings