Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 1.2e-125 453.4 254 100.0
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 2.3e-49 199.9 188 60.6
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.3e-49 199.9 185 61.6
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 8.9e-49 198.0 197 57.4
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 3.4e-48 196.1 165 64.8
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 3.4e-48 196.1 179 67.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 5.8e-48 195.3 176 64.2
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 7.5e-48 194.9 179 67.6
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 7.5e-48 194.9 179 67.0
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.3e-47 194.1 172 62.2
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 4.1e-46 189.1 196 59.7
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 2.7e-45 186.4 191 56.0
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 3.9e-44 182.6 183 56.8
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 6.6e-44 181.8 178 60.7
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 8.6e-44 181.4 200 56.0
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 7.3e-43 178.3 190 54.7
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.2e-42 177.6 168 60.1
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.2e-42 177.6 212 59.9
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 1.2e-42 177.6 205 61.5
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 2.1e-42 176.8 178 56.7
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.6e-42 176.0 207 57.0
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 4.7e-42 175.6 202 52.5
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 4.7e-42 175.6 168 58.3
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 8.1e-42 174.9 197 55.3
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 8.1e-42 174.9 178 57.3
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 1.1e-41 174.5 192 56.8
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.1e-41 174.5 194 54.1
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.1e-41 174.5 173 59.0
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 1.8e-41 173.7 200 54.0
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 3.1e-41 172.9 188 54.3
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 3.1e-41 172.9 206 53.9
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 4.0e-41 172.6 194 58.8
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 4.0e-41 172.6 166 59.0
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 5.2e-41 172.2 172 59.3
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 5.2e-41 172.2 202 60.4
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 5.2e-41 172.2 196 53.6
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 8.9e-41 171.4 195 53.3
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 8.9e-41 171.4 173 58.4
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 1.2e-40 171.0 194 53.6
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.0e-40 170.2 220 49.5
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.6e-40 169.9 200 53.0
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 2.6e-40 169.9 200 53.0
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 4.4e-40 169.1 213 51.6
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 4.4e-40 169.1 196 53.6
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 4.4e-40 169.1 206 51.9
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 5.8e-40 168.7 184 63.6
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 9.8e-40 167.9 202 52.5
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.7e-39 167.2 201 53.2
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.7e-39 167.2 201 53.2
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.7e-39 167.2 200 52.5
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 4.9e-39 165.6 163 60.1
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 8.3e-39 164.9 171 56.7
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 7.1e-38 161.8 169 56.8
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 9.2e-38 161.4 170 56.5
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 3.5e-37 159.5 191 55.0
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 6.0e-37 158.7 204 45.6
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 6.0e-37 158.7 199 52.8
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 7.8e-37 158.3 197 49.7
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 7.8e-37 158.3 169 53.8
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 1.3e-36 157.5 208 50.5
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.3e-36 157.5 208 53.4
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 3.9e-36 156.0 167 55.1
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.5e-35 153.3 172 53.5
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.3e-35 152.5 179 55.3
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 7.3e-35 151.8 193 48.7
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 9.5e-35 151.4 193 48.7
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.2e-34 151.0 206 45.6
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 4.7e-34 149.1 205 48.8
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 4.7e-34 149.1 196 48.0
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.4e-33 147.5 157 52.9
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 5.2e-33 145.6 206 47.1
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 6.8e-33 145.2 195 49.2
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.4e-32 142.9 175 57.1
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 3.4e-32 142.9 210 45.2
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 1.3e-31 141.0 192 49.0
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.2e-31 140.2 174 51.7
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 2.2e-31 140.2 147 57.8
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 2.9e-31 139.8 176 47.2
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 2.9e-31 139.8 176 47.2
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 3.8e-31 139.4 216 47.7
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 6.4e-31 138.7 218 44.5
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 1.4e-30 137.5 183 45.9
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 5.4e-30 135.6 181 52.5
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 5.4e-30 135.6 181 52.5
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 5.4e-30 135.6 181 52.5
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 9.2e-30 134.8 218 42.7
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 9.2e-30 134.8 152 56.6
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 9.2e-30 134.8 198 49.5
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 1.2e-29 134.4 227 42.3
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.2e-29 134.4 196 45.9
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-29 134.0 174 49.4
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 6.0e-29 132.1 224 42.0
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 6.0e-29 132.1 224 42.0
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 1.3e-28 131.0 225 41.3
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 3.9e-28 129.4 224 40.6
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 3.6e-26 122.9 208 38.9
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 4.7e-26 122.5 223 43.0
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 6.2e-26 122.1 171 45.0
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 8.9e-25 118.2 203 41.4
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 2.6e-24 116.7 204 42.2
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 2.2e-23 113.6 184 42.4
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.8e-23 112.8 115 58.3
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 7.1e-22 108.6 145 46.2
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 9.3e-22 108.2 181 40.9
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 8.7e-20 101.7 187 38.0
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 5.6e-19 99.0 160 42.5
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 3.1e-17 93.2 62 75.8
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 4.5e-16 89.4 54 83.3
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 4.2e-14 82.8 50 82.0
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 1.3e-10 71.2 200 33.5
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 3.2e-06 56.6 81 46.9
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 4.2e-06 56.2 56 53.6
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 7.1e-06 55.5 85 42.4


User provided reference genes

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