Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12470 Coffea canephora HOM05D008099 ORTHO05D010084 5.8e-59 230.7 120 100.0
Cc08_g12450 Coffea canephora HOM05D008099 ORTHO05D010084 1.7e-42 176.0 89 96.6
Sopen08g003320 Solanum pennellii HOM05D008099 ORTHO05D010084 1.4e-23 113.2 125 47.2
Solyc08g007375.1 Solanum lycopersicum HOM05D008099 ORTHO05D010084 1.8e-23 112.8 125 47.2
PGSC0003DMG400012531 Solanum tuberosum HOM05D008099 ORTHO05D010084 3.0e-23 112.1 125 47.2
PGSC0003DMG400035312 Solanum tuberosum HOM05D008099 ORTHO05D010084 5.2e-23 111.3 120 50.0
Solyc06g060675.1 Solanum lycopersicum HOM05D008099 ORTHO05D010084 3.7e-21 105.1 120 47.5
Sopen06g020800 Solanum pennellii HOM05D008099 ORTHO05D010084 3.7e-21 105.1 120 47.5
PGSC0003DMG400013812 Solanum tuberosum HOM05D008099 ORTHO05D010084 2.4e-20 102.4 120 46.7
Hma1.2p1_0316F.1_g123190 Hydrangea macrophylla HOM05D008099 ORTHO05D010084 5.3e-20 101.3 121 50.4
Rhsim07G0108300 Rhododendron simsii HOM05D008099 ORTHO05D010084 1.7e-18 96.3 122 47.5
Ciclev10022924m.g Citrus clementina HOM05D008099 ORTHO05D010084 1.5e-17 93.2 124 46.0
Oeu019597.1 Olea europaea HOM05D008099 ORTHO05D010084 3.6e-16 88.6 121 44.6
Hma1.2p1_0316F.1_g123200 Hydrangea macrophylla HOM05D008099 ORTHO05D010084 4.7e-16 88.2 121 47.1
Gorai.004G198900 Gossypium raimondii HOM05D008099 ORTHO05D010084 6.1e-16 87.8 124 43.5
Cpa.g.sc29.154 Carica papaya HOM05D008099 ORTHO05D010084 1.8e-15 86.3 120 40.8
TAR627G0883 Trochodendron aralioides HOM05D008099 ORTHO05D010084 4.0e-15 85.1 120 43.3
Gorai.008G235500 Gossypium raimondii HOM05D008099 ORTHO05D010084 8.8e-15 84.0 120 42.5
CiPaw.12G109700 Carya illinoinensis HOM05D008099 ORTHO05D010084 1.5e-14 83.2 120 44.2
Atru.chr9.1318 Acer truncatum HOM05D008099 ORTHO05D010084 2.0e-14 82.8 111 39.6
Gohir.A12G217300 Gossypium hirsutum HOM05D008099 ORTHO05D010084 2.0e-14 82.8 120 42.5
Gohir.D12G219832 Gossypium hirsutum HOM05D008099 ORTHO05D010084 2.6e-14 82.4 120 42.5
Thecc.03G251800 Theobroma cacao HOM05D008099 ORTHO05D010084 3.4e-14 82.0 120 41.7
Actinidia05205 Actinidia chinensis HOM05D008099 ORTHO05D010084 4.4e-14 81.6 122 39.3
Migut.N00880 Erythranthe guttata HOM05D008099 ORTHO05D010084 4.8e-13 78.2 88 50.0
TAR624G1172 Trochodendron aralioides HOM05D008099 ORTHO05D010084 4.8e-13 78.2 120 43.3
ECA233G2908 Erigeron canadensis HOM05D008099 ORTHO05D010084 1.8e-12 76.3 115 33.9
SalBow6G1675 Salvia bowleyana HOM05D008099 ORTHO05D010084 1.8e-12 76.3 121 45.5
Potri.001G158100 Populus trichocarpa HOM05D008099 ORTHO05D010084 3.1e-12 75.5 120 36.7
Potri.003G076700 Populus trichocarpa HOM05D008099 ORTHO05D010084 9.1e-12 73.9 120 36.7
DCAR_004951 Daucus carota HOM05D008099 ORTHO05D010084 2.7e-11 72.4 120 36.7
TAR374G1517 Trochodendron aralioides HOM05D008099 ORTHO05D010084 3.5e-11 72.0 121 39.7
TWI60G1554 Tripterygium wilfordii HOM05D008099 ORTHO05D010084 4.5e-11 71.6 121 37.2
DCAR_027775 Daucus carota HOM05D008099 ORTHO05D010084 7.7e-11 70.9 120 38.3
Manes.01G080400 Manihot esculenta HOM05D008099 ORTHO05D010084 1.7e-10 69.7 124 42.7
CiPaw.11G154100 Carya illinoinensis HOM05D008099 ORTHO05D010084 6.6e-10 67.8 121 39.7
MD04G1064000 Malus domestica HOM05D008099 ORTHO05D010084 8.6e-10 67.4 131 36.6
Sabra01G0133400 Salix brachista HOM05D008099 ORTHO05D010084 8.6e-10 67.4 120 35.8
Lsat_1_v5_gn_5_120200 Lactuca sativa HOM05D008099 ORTHO05D010084 2.5e-09 65.9 121 35.5
Prupe.5G069300 Prunus persica HOM05D008099 ORTHO05D010084 2.5e-09 65.9 127 37.0
COL.COLO4_37181 Corchorus olitorius HOM05D008099 ORTHO05D010084 3.3e-09 65.5 127 34.6
Lsat_1_v5_gn_3_841 Lactuca sativa HOM05D008099 ORTHO05D010084 4.2e-09 65.1 126 36.5
Lsat_1_v5_gn_4_4600 Lactuca sativa HOM05D008099 ORTHO05D010084 9.5e-09 63.9 121 35.5
Aqoxy7G00810 Aquilegia oxysepala HOM05D008099 ORTHO05D010084 2.1e-08 62.8 116 40.5
Gohir.A03G008200 Gossypium hirsutum HOM05D008099 ORTHO05D010084 2.1e-08 62.8 125 35.2
Lsat_1_v5_gn_6_91081 Lactuca sativa HOM05D008099 ORTHO05D010084 2.1e-08 62.8 118 33.9
Cfa012714 Carpinus fangiana HOM05D008099 ORTHO05D010084 6.1e-08 61.2 116 38.8
FAN04G2136 Fragaria x ananassa HOM05D008099 ORTHO05D010084 1.0e-07 60.5 140 33.6
FAN08G3271 Fragaria x ananassa HOM05D008099 ORTHO05D010084 1.4e-07 60.1 139 33.8
Nn6g33965 Nelumbo nucifera HOM05D008099 ORTHO05D010084 1.4e-07 60.1 120 36.7
Gohir.A08G170632 Gossypium hirsutum HOM05D008099 ORTHO05D010084 1.8e-07 59.7 70 48.6
Gohir.D08G188832 Gossypium hirsutum HOM05D008099 ORTHO05D010084 1.8e-07 59.7 70 48.6
SGA_v2.0_scaffold52G19121 Striga asiatica HOM05D002583 ORTHO05D002776 5.2e-07 58.2 114 39.5
Eucgr.D02077 Eucalyptus grandis HOM05D008099 ORTHO05D010084 6.8e-07 57.8 129 34.9
FAN18G2867 Fragaria x ananassa HOM05D008099 ORTHO05D010084 8.9e-07 57.4 143 32.2
FAN18G4449 Fragaria x ananassa HOM05D008099 ORTHO05D010084 8.9e-07 57.4 143 32.2
Gohir.D03G162700 Gossypium hirsutum HOM05D008099 ORTHO05D010084 8.9e-07 57.4 125 33.6
Gorai.003G171300 Gossypium raimondii HOM05D008099 ORTHO05D010084 8.9e-07 57.4 105 38.1
FvH4_5g18850 Fragaria vesca HOM05D008099 ORTHO05D010084 1.2e-06 57.0 144 31.9
Sc22g0000850 Simmondsia chinensis HOM05D008099 ORTHO05D010084 1.5e-06 56.6 125 33.6
Ah.12g056830 Amaranthus hybridus HOM05D054031 ORTHO05D010084 2.6e-06 55.8 121 37.2
Duzib205G0280 Durio zibethinus HOM05D003437 ORTHO05D004070 2.6e-06 55.8 108 33.3


User provided reference genes

Program Settings