Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12460 Coffea canephora HOM05D005354 ORTHO05D006315 2.4e-29 131.3 59 100.0
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 4.9e-27 123.6 57 94.7
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 1.9e-23 111.7 57 84.2
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 3.3e-23 110.9 55 83.6
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 4.3e-23 110.5 57 84.2
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.7e-23 110.2 58 82.8
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.7e-23 110.2 58 82.8
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 7.4e-23 109.8 57 82.5
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 9.7e-23 109.4 57 78.9
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 1.6e-22 108.6 57 82.5
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 2.2e-22 108.2 57 80.7
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.2e-22 108.2 57 80.7
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 2.2e-22 108.2 57 78.9
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 2.2e-22 108.2 57 80.7
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.8e-22 107.8 57 80.7
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 3.7e-22 107.5 55 80.0
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 4.8e-22 107.1 56 78.6
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 4.8e-22 107.1 57 78.9
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 8.2e-22 106.3 57 78.9
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 1.1e-21 105.9 56 82.1
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 1.1e-21 105.9 57 77.2
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 1.8e-21 105.1 55 74.5
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.8e-21 105.1 57 77.2
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.8e-21 105.1 57 77.2
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 1.8e-21 105.1 57 77.2
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 2.4e-21 104.8 57 78.9
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.4e-21 104.8 57 78.9
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 3.1e-21 104.4 52 84.6
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 3.1e-21 104.4 57 77.2
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 3.1e-21 104.4 57 77.2
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 3.1e-21 104.4 57 77.2
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 4.1e-21 104.0 57 78.9
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 5.3e-21 103.6 57 75.4
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 5.3e-21 103.6 57 78.9
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 1.2e-20 102.4 55 78.2
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 1.2e-20 102.4 57 73.7
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 1.2e-20 102.4 57 75.4
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.2e-20 102.4 57 75.4
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 1.2e-20 102.4 57 75.4
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 1.2e-20 102.4 57 75.4
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 1.5e-20 102.1 55 76.4
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 1.5e-20 102.1 57 78.9
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 2.0e-20 101.7 57 77.2
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 2.0e-20 101.7 56 75.0
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 2.6e-20 101.3 57 73.7
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 3.4e-20 100.9 57 73.7
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 3.4e-20 100.9 57 75.4
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 4.5e-20 100.5 51 82.4
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 5.9e-20 100.1 57 71.9
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 7.7e-20 99.8 57 75.4
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 7.7e-20 99.8 57 75.4
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 1.0e-19 99.4 51 80.4
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 1.0e-19 99.4 57 73.7
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 1.0e-19 99.4 54 77.8
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 1.3e-19 99.0 57 73.7
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 1.3e-19 99.0 57 71.9
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 1.7e-19 98.6 59 69.5
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 2.9e-19 97.8 57 71.9
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 2.9e-19 97.8 57 71.9
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 3.8e-19 97.4 51 78.4
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 5.0e-19 97.1 57 71.9
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 5.0e-19 97.1 57 68.4
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 5.0e-19 97.1 51 78.4
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 5.0e-19 97.1 56 71.4
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 6.5e-19 96.7 57 70.2
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 6.5e-19 96.7 57 70.2
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.1e-18 95.9 57 73.7
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 1.1e-18 95.9 57 70.2
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 1.1e-18 95.9 57 71.9
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 1.4e-18 95.5 57 68.4
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 1.9e-18 95.1 57 70.2
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 1.9e-18 95.1 57 68.4
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 3.2e-18 94.4 57 70.2
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 3.2e-18 94.4 55 74.5
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 4.2e-18 94.0 57 70.2
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 7.2e-18 93.2 56 67.9
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 7.2e-18 93.2 56 67.9
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 7.2e-18 93.2 57 68.4
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 1.2e-17 92.4 57 70.2
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 1.2e-17 92.4 57 68.4
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 2.7e-17 91.3 56 66.1
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 2.7e-17 91.3 57 68.4
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 2.7e-17 91.3 56 62.5
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 3.6e-17 90.9 57 64.9
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 3.6e-17 90.9 54 68.5
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 6.1e-17 90.1 52 73.1
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 6.1e-17 90.1 57 66.7
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 6.1e-17 90.1 51 74.5
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 7.9e-17 89.7 57 68.4
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 1.0e-16 89.4 52 71.2
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.4e-16 89.0 57 66.7
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.4e-16 89.0 57 66.7
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.4e-16 89.0 57 66.7
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 1.8e-16 88.6 56 62.5
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 1.8e-16 88.6 57 64.9
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 3.0e-16 87.8 52 71.2
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 3.0e-16 87.8 57 66.7
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 3.0e-16 87.8 56 62.5
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 3.0e-16 87.8 57 63.2
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 3.0e-16 87.8 57 63.2
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 5.1e-16 87.0 52 69.2
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 6.7e-16 86.7 52 67.3
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 8.8e-16 86.3 57 63.2
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 8.8e-16 86.3 52 69.2
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 1.1e-15 85.9 57 61.4
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.9e-15 85.1 56 60.7
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 7.4e-15 83.2 51 66.7
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 7.4e-15 83.2 51 66.7
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 7.4e-15 83.2 51 66.7
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 7.4e-15 83.2 51 66.7
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 1.3e-14 82.4 51 64.7
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 2.2e-14 81.6 52 63.5
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 8.2e-14 79.7 56 64.3
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 3.1e-13 77.8 47 61.7
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 4.5e-12 73.9 38 78.9
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 4.5e-12 73.9 38 78.9
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 4.5e-12 73.9 39 74.4
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 1.0e-11 72.8 39 71.8
PRCOL_00004836 Prasinoderma coloniale HOM05D005354 ORTHO05D006315 3.0e-08 61.2 51 51.0
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 9.7e-07 56.2 45 51.1
Nn6g33968 Nelumbo nucifera HOM05D005354 ORTHO05D006315 8.2e-06 53.1 27 81.5


User provided reference genes

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