Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.3e-133 478.4 245 100.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.3e-102 376.7 247 78.9
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 3.0e-102 375.6 247 78.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.1e-101 373.6 247 78.1
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.4e-101 370.9 249 78.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.4e-101 370.9 249 78.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 9.6e-101 370.5 245 77.6
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-100 369.4 248 76.2
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.8e-100 368.2 248 77.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.1e-99 365.5 245 75.1
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 76.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 76.6
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 3.1e-99 365.5 247 76.5
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 9.0e-99 364.0 249 75.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.5e-98 363.2 246 75.6
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 7.6e-98 360.9 246 74.8
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.6e-98 360.9 247 76.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 7.6e-98 360.9 248 75.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.3e-97 360.1 246 77.2
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.7e-97 359.8 248 75.0
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 74.6
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 74.6
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 6.5e-97 357.8 245 75.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 8.5e-97 357.5 265 72.8
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.9e-96 356.3 247 75.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.5e-96 355.9 248 75.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 3.2e-96 355.5 245 75.1
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 4.2e-96 355.1 248 74.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 9.3e-96 354.0 248 73.8
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 9.3e-96 354.0 249 74.3
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.1e-95 352.8 245 73.5
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.7e-95 352.4 245 74.3
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.3e-94 349.4 249 72.3
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.3e-94 349.4 247 73.7
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.0e-94 349.0 248 72.6
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.0e-94 349.0 246 74.8
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.0e-94 349.0 246 73.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.7e-94 347.8 247 73.3
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.7e-94 347.8 248 71.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.7e-94 347.4 246 73.2
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.1e-93 347.1 248 72.6
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-93 347.1 248 71.8
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.5e-93 346.7 257 73.9
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.9e-93 346.3 251 70.9
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-93 346.3 241 76.8
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.5e-93 345.9 245 71.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.3e-93 345.5 246 73.2
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 7.4e-93 344.4 246 72.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.6e-92 343.2 248 71.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.2e-92 342.8 224 75.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.2e-92 342.8 249 71.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 2.8e-92 342.4 256 73.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 3.7e-92 342.0 243 76.1
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.1e-91 340.5 248 72.2
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.4e-91 340.1 257 71.6
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.4e-91 339.3 251 68.9
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.4e-91 339.3 252 71.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 2.4e-91 339.3 251 72.1
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.1e-91 339.0 249 71.1
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.1e-91 338.6 246 71.5
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.9e-91 337.8 253 69.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.0e-90 336.3 245 71.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.6e-90 335.9 235 74.9
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.9e-90 334.7 240 71.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.0e-89 334.0 247 72.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.7e-89 333.2 236 75.4
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.9e-89 332.4 244 70.5
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.8e-89 332.0 247 69.2
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 5.0e-89 331.6 254 72.0
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 8.5e-89 330.9 249 70.7
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.1e-88 330.5 247 69.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.4e-88 330.1 255 67.8
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.2e-88 328.9 250 72.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.5e-88 328.2 236 72.0
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 5.5e-88 328.2 247 70.0
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.5e-88 328.2 213 76.5
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 247 69.6
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 247 69.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 247 69.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.2e-88 327.8 247 69.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.1e-87 326.2 247 69.2
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-87 325.5 247 69.6
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.6e-87 325.1 236 71.6
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.6e-87 325.1 220 74.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 6.1e-87 324.7 247 71.7
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-86 323.9 246 68.7
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.0e-86 323.9 247 68.8
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.0e-85 319.7 231 72.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.6e-85 319.3 243 66.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 7.4e-85 317.8 243 65.4
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 9.7e-85 317.4 249 68.7
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.7e-84 316.6 242 65.7
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.7e-84 316.6 238 71.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.2e-84 316.2 257 66.9
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.8e-84 315.8 243 65.0
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.7e-84 315.5 249 69.5
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-84 315.1 204 76.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.3e-84 314.7 243 65.0
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 8.2e-84 314.3 243 64.6
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.1e-83 313.9 243 64.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.4e-83 313.5 249 63.5
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-83 313.2 244 64.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.8e-83 313.2 246 65.9
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 3.1e-83 312.4 244 65.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.1e-83 312.0 257 66.1
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.6e-82 309.3 244 64.3
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.4e-82 308.9 253 66.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.4e-82 308.9 243 64.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.4e-82 308.9 243 65.4
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.5e-82 308.5 243 63.8
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 7.7e-82 307.8 243 63.8
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.2e-81 306.2 237 69.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.8e-81 305.4 244 64.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.5e-81 304.7 243 64.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.4e-80 303.5 243 67.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.5e-80 302.8 241 64.7
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 3.2e-80 302.4 249 64.7
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 7.2e-80 301.2 251 63.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.1e-79 299.7 244 63.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.7e-79 299.3 232 67.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.7e-79 299.3 248 62.9
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 6.1e-79 298.1 264 63.3
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 6.1e-79 298.1 313 55.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.3e-78 296.2 251 61.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.1e-77 293.9 246 62.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 4.4e-77 292.0 323 53.3
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 6.3e-76 288.1 244 62.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 6.3e-76 288.1 244 62.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 6.3e-76 288.1 244 62.3
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.4e-75 286.2 387 47.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.6e-74 283.5 248 60.1
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.6e-74 282.7 244 61.5
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.0e-69 266.5 249 58.6
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.0e-66 256.5 233 58.8
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.7e-65 253.4 256 55.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 8.5e-65 251.1 240 59.2
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 6.1e-63 245.0 232 59.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.4e-61 239.2 246 51.6
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.3e-60 235.0 152 73.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.8e-59 233.4 147 73.5
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 5.4e-59 231.9 136 80.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 7.7e-58 228.0 252 50.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.2e-55 220.7 214 57.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.6e-55 219.2 246 50.0
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.1e-55 218.4 170 65.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-54 216.5 166 65.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.9e-52 208.8 247 51.0
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-48 196.8 192 56.8
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.0e-45 186.8 288 41.7
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.1e-43 181.0 108 75.9
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.5e-40 170.6 117 71.8
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.7e-36 157.1 127 68.5
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 3.2e-35 152.9 130 66.9
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 7.0e-35 151.8 293 37.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 4.6e-34 149.1 276 38.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 7.5e-29 131.7 95 65.3
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 9.9e-29 131.3 98 72.4
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.1e-26 123.6 87 65.5
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.6e-23 112.8 91 63.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 4.7e-23 112.5 69 76.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 9.2e-19 98.2 75 68.0
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.0e-17 94.7 120 53.3
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.3e-17 94.4 125 38.4
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 3.9e-17 92.8 75 64.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 6.6e-17 92.0 90 47.8
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 6.6e-17 92.0 78 64.1
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.4e-11 74.3 81 48.1
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 6.0e-10 68.9 132 40.9
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.0e-09 68.2 92 51.1
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 7.3e-08 62.0 133 31.6


User provided reference genes

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