Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 5.0e-35 151.0 101 100.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.2e-18 94.7 100 60.0
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 5.5e-18 94.4 98 63.3
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.6e-17 92.8 103 61.2
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 6.1e-17 90.9 100 59.0
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 7.9e-17 90.5 103 59.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.8e-16 89.4 100 58.0
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 5.1e-16 87.8 98 58.2
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 8.8e-16 87.0 110 56.4
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.5e-15 86.3 102 58.8
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 4.4e-15 84.7 100 57.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 4.4e-15 84.7 100 61.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.7e-14 82.8 103 57.3
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.7e-14 82.8 98 57.1
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.2e-14 82.4 100 54.0
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.7e-14 81.6 99 50.5
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 4.8e-14 81.3 103 53.4
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 6.3e-14 80.9 98 52.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 6.3e-14 80.9 110 52.7
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.1e-13 80.1 103 52.4
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.4e-13 79.7 101 56.4
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.8e-13 79.3 103 52.4
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.4e-13 79.0 102 51.0
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 2.4e-13 79.0 98 54.1
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.1e-13 78.2 100 52.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 5.3e-13 77.8 111 53.2
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 5.3e-13 77.8 101 52.5
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 7.0e-13 77.4 98 60.2
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.0e-13 77.4 105 54.3
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 9.1e-13 77.0 109 50.5
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-12 76.6 102 52.0
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-12 76.6 102 52.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.2e-12 76.6 102 52.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.2e-12 76.6 103 51.5
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.6e-12 76.3 103 49.5
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-12 75.9 109 50.5
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 2.0e-12 75.9 101 52.5
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.0e-12 75.9 92 56.5
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.0e-12 75.9 92 56.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.6e-12 75.5 109 49.5
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.6e-12 75.5 98 54.1
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.6e-12 75.5 98 54.1
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.6e-12 75.5 100 53.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 2.6e-12 75.5 101 64.4
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 2.6e-12 75.5 98 54.1
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 3.5e-12 75.1 100 51.0
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 3.5e-12 75.1 100 51.0
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 4.5e-12 74.7 89 53.9
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 4.5e-12 74.7 103 56.3
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 4.5e-12 74.7 113 50.4
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.9e-12 74.3 106 50.0
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 5.9e-12 74.3 99 52.5
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 5.9e-12 74.3 99 51.5
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 5.9e-12 74.3 110 48.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 7.7e-12 73.9 98 51.0
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.7e-12 73.9 100 50.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.0e-11 73.6 110 49.1
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 1.3e-11 73.2 109 48.6
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 1.3e-11 73.2 109 48.6
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.2e-11 72.4 100 51.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 2.2e-11 72.4 98 50.0
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 2.2e-11 72.4 98 50.0
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.9e-11 72.0 105 49.5
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.9e-11 72.0 105 49.5
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 5.0e-11 71.2 102 51.0
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 5.0e-11 71.2 102 49.0
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.0e-11 71.2 107 50.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 5.0e-11 71.2 101 47.5
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 6.5e-11 70.9 107 47.7
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 2.5e-10 68.9 100 51.0
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.5e-10 68.9 100 55.0
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 4.2e-10 68.2 97 48.5
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 4.2e-10 68.2 102 50.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.2e-10 68.2 114 45.6
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 5.5e-10 67.8 103 51.5
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 7.2e-10 67.4 50 76.0
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 7.2e-10 67.4 103 52.4
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 7.2e-10 67.4 100 52.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 7.2e-10 67.4 105 50.5
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 9.4e-10 67.0 101 50.5
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.2e-09 66.6 103 49.5
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.2e-09 66.6 49 75.5
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.2e-09 66.6 100 49.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.6e-09 66.2 100 61.0
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.1e-09 65.9 100 48.0
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 2.1e-09 65.9 104 47.1
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.7e-09 65.5 103 51.5
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.7e-09 65.5 100 51.0
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.7e-09 65.5 104 49.0
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 2.7e-09 65.5 101 46.5
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.1e-09 64.3 100 47.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.1e-09 64.3 100 47.0
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.1e-09 64.3 100 47.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 6.1e-09 64.3 101 51.5
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 8.0e-09 63.9 100 60.0
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.0e-08 63.5 104 48.1
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 8.8e-08 60.5 89 47.2
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.1e-07 60.1 98 45.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.5e-07 59.7 38 78.9
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 2.0e-07 59.3 110 46.4
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 4.4e-07 58.2 98 58.2
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 4.4e-07 58.2 98 42.9
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 4.4e-07 58.2 45 66.7
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.7e-06 56.2 102 46.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.7e-06 55.1 101 46.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 3.7e-06 55.1 96 42.7
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 4.8e-06 54.7 101 43.6
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.8e-06 54.7 96 41.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 4.8e-06 54.7 96 41.7
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 6.3e-06 54.3 47 70.2
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 8.2e-06 53.9 96 41.7
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 8.2e-06 53.9 101 42.6


User provided reference genes

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