Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 2.2e-162 576.2 476 100.0
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 8.2e-72 275.4 473 58.4
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 2.2e-69 267.3 462 54.1
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 5.2e-66 256.1 469 57.1
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.0e-65 254.2 473 63.4
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 5.7e-65 252.7 475 57.5
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 7.0e-63 245.7 475 56.6
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 9.1e-63 245.4 473 51.6
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 2.2e-61 240.7 472 56.4
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 2.9e-61 240.4 469 65.5
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 9.4e-60 235.3 455 62.2
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 2.1e-59 234.2 475 56.0
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 4.7e-59 233.0 467 60.8
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.0e-58 231.9 449 63.7
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.3e-57 226.9 473 60.5
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.3e-56 224.9 473 60.5
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 2.8e-56 223.8 477 60.2
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 9.1e-55 218.8 471 59.4
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 9.1e-55 218.8 471 59.7
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 9.1e-55 218.8 474 48.9
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.6e-54 218.0 471 59.7
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 4.5e-54 216.5 472 51.9
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 5.9e-54 216.1 457 59.3
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.7e-53 214.5 475 51.2
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.1e-52 211.8 430 60.5
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 1.1e-52 211.8 450 63.8
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.9e-52 211.1 450 59.8
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 5.5e-52 209.5 453 45.5
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 5.5e-52 209.5 452 59.7
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 9.4e-52 208.8 453 44.2
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 1.2e-51 208.4 453 45.5
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 1.6e-51 208.0 468 54.7
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 2.7e-51 207.2 468 47.2
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 4.7e-51 206.5 471 56.1
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.4e-50 204.9 452 44.9
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 1.8e-50 204.5 454 52.6
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 2.3e-50 204.1 468 43.6
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 3.0e-50 203.8 442 63.8
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 1.2e-49 201.8 452 44.9
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 4.4e-49 199.9 470 46.8
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 7.5e-49 199.1 474 52.1
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.7e-48 198.0 473 55.6
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 1.4e-47 194.9 471 56.3
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 4.1e-47 193.4 441 56.2
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 4.1e-47 193.4 473 53.1
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 4.1e-47 193.4 473 53.1
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 4.1e-47 193.4 473 53.1
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 2.0e-46 191.0 452 42.7
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 2.0e-46 191.0 469 53.9
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 2.0e-46 191.0 475 46.5
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 2.7e-46 190.7 473 52.0
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 1.0e-45 188.7 452 43.1
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.3e-45 188.3 450 46.2
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.9e-45 187.2 470 52.8
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.8e-45 186.8 469 54.4
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 3.8e-45 186.8 475 44.2
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 8.6e-45 185.7 474 52.3
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.9e-44 184.5 477 53.5
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.5e-44 184.1 464 51.7
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 5.5e-44 183.0 470 53.8
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 1.2e-43 181.8 465 59.4
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.6e-43 181.4 447 53.7
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 1.6e-43 181.4 468 52.6
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 1.6e-43 181.4 445 58.4
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 2.1e-43 181.0 469 44.8
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 3.6e-43 180.3 474 50.2
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 3.6e-43 180.3 474 51.3
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 3.6e-43 180.3 449 60.6
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 1.4e-42 178.3 432 41.7
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 1.4e-42 178.3 450 53.3
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 2.3e-42 177.6 456 55.5
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 5.2e-42 176.4 160 54.4
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 5.2e-42 176.4 465 46.0
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 6.8e-42 176.0 397 56.9
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 8.9e-42 175.6 430 65.6
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.5e-41 174.9 466 44.8
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 4.9e-40 169.9 462 58.7
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 1.1e-39 168.7 449 45.4
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.4e-39 168.3 143 62.9
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 3.1e-39 167.2 155 55.5
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 2.7e-38 164.1 447 45.6
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 3.8e-37 160.2 470 57.4
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 6.6e-37 159.5 447 51.7
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 4.3e-36 156.8 469 57.6
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 5.6e-36 156.4 406 33.0
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 3.6e-35 153.7 473 50.5
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 1.4e-34 151.8 471 52.0
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 1.4e-34 151.8 474 54.6
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 6.8e-34 149.4 474 30.2
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 3.7e-32 143.7 352 67.3
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 9.2e-31 139.0 135 54.1
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 4.3e-28 130.2 127 51.2
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 1.6e-27 128.3 398 53.8
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 9.8e-25 119.0 378 57.1
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 8.3e-24 115.9 142 44.4
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 3.2e-23 114.0 131 47.3
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 9.2e-23 112.5 138 44.9
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 1.2e-22 112.1 144 41.7
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 1.6e-22 111.7 104 55.8
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 7.8e-22 109.4 133 46.6
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 3.3e-20 104.0 141 40.4
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 5.6e-20 103.2 105 46.7
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 5.6e-20 103.2 377 59.9
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 7.3e-20 102.8 376 59.8
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 2.3e-18 97.8 122 38.5
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 4.0e-18 97.1 134 40.3
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 6.8e-18 96.3 359 62.1
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 8.9e-18 95.9 124 42.7
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 8.9e-18 95.9 134 42.5
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 5.8e-17 93.2 125 40.8
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.7e-16 91.7 124 44.4
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 2.2e-16 91.3 154 38.3
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 9.2e-15 85.9 102 42.2
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 3.5e-14 84.0 119 43.7
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 5.6e-12 76.6 411 31.6
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 8.1e-11 72.8 139 33.1
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 2.4e-10 71.2 136 33.8
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 4.0e-10 70.5 70 52.9
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 8.9e-10 69.3 127 35.4
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 9.9e-09 65.9 102 38.2
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 1.3e-08 65.5 70 51.4
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.9e-08 64.3 154 31.2
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.4e-07 62.0 160 31.2
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 1.9e-07 61.6 151 30.5
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.4e-07 61.2 161 31.7
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.2e-07 60.8 164 31.1
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 4.1e-07 60.5 161 30.4
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 5.4e-07 60.1 57 54.4
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 5.4e-07 60.1 135 31.1
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 7.1e-07 59.7 135 31.9
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 7.1e-07 59.7 99 38.4
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 9.2e-07 59.3 135 31.9
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 9.2e-07 59.3 153 29.4
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 1.2e-06 58.9 160 30.0
RcHm_v2.0_Chr2g0108971 Rosa chinensis HOM05D000424 ORTHO05D000355 1.6e-06 58.5 135 31.9
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 2.1e-06 58.2 135 31.1
CSS0011638 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 2.7e-06 57.8 135 31.1
CSS0044152 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 2.7e-06 57.8 135 31.1
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 3.5e-06 57.4 135 30.4
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 3.5e-06 57.4 135 31.1
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 4.6e-06 57.0 138 29.7
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 6.0e-06 56.6 134 30.6
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 6.0e-06 56.6 134 30.6
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 7.8e-06 56.2 134 30.6
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 7.8e-06 56.2 114 29.8
FAN23G2322 Fragaria x ananassa HOM05D000424 ORTHO05D000355 7.8e-06 56.2 170 28.8
Medtr8g071300 Medicago truncatula HOM05D000424 ORTHO05D000355 7.8e-06 56.2 135 29.6
Nitab4.5_0000020g0300 Nicotiana tabacum HOM05D000424 ORTHO05D000355 7.8e-06 56.2 135 29.6
Oeu013346.1 Olea europaea HOM05D000424 ORTHO05D000355 7.8e-06 56.2 135 31.9
Prupe.6G215900 Prunus persica HOM05D000424 ORTHO05D000355 7.8e-06 56.2 135 30.4
TPR.G8466 Trifolium pratense HOM05D000424 ORTHO05D000355 7.8e-06 56.2 135 30.4


User provided reference genes

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