Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g11840 Coffea canephora HOM05D007468 ORTHO05D009051 4.8e-105 384.8 240 100.0
Peaxi162Scf00001g00282 Petunia axillaris HOM05D007468 ORTHO05D009051 7.2e-24 115.2 133 53.4
Nitab4.5_0000116g0050 Nicotiana tabacum HOM05D007468 ORTHO05D009051 1.0e-22 111.3 132 55.3
PGSC0003DMG400031830 Solanum tuberosum HOM05D007468 ORTHO05D009051 1.0e-22 111.3 143 53.1
Nitab4.5_0004002g0010 Nicotiana tabacum HOM05D007468 ORTHO05D009051 1.3e-22 110.9 132 55.3
CAN.G668.23 Capsicum annuum HOM05D007468 ORTHO05D009051 1.1e-21 107.8 124 54.0
Oeu008452.1 Olea europaea HOM05D007468 ORTHO05D009051 7.4e-21 105.1 129 51.9
Oeu008450.1 Olea europaea HOM05D007468 ORTHO05D009051 9.7e-21 104.8 129 51.2
Solyc09g075660.3 Solanum lycopersicum HOM05D007468 ORTHO05D009051 3.7e-20 102.8 142 51.4
Sopen09g030460 Solanum pennellii HOM05D007468 ORTHO05D009051 8.2e-20 101.7 142 51.4
Rhsim01G0289100 Rhododendron simsii HOM05D007468 ORTHO05D009051 1.1e-16 91.3 158 41.1
Lj1C20T8 Lonicera japonica HOM05D007468 ORTHO05D009051 9.4e-16 88.2 134 44.0
TAR362G1257 Trochodendron aralioides HOM05D007468 ORTHO05D009051 4.7e-15 85.9 131 45.0
FvH4_5g39630 Fragaria vesca HOM05D007468 ORTHO05D009051 6.1e-15 85.5 142 45.8
SHI19828 Sapria himalayana HOM05D007468 ORTHO05D009051 6.1e-15 85.5 131 41.2
FAN08G3013 Fragaria x ananassa HOM05D007468 ORTHO05D009051 7.9e-15 85.1 142 45.8
QL12p028937 Quercus lobata HOM05D007468 ORTHO05D009051 1.0e-14 84.7 138 47.8
CAN.G1209.19 Capsicum annuum HOM05D007468 ORTHO05D009051 1.8e-14 84.0 137 41.6
PSO761G0006 Papaver somniferum HOM05D007468 ORTHO05D009051 3.0e-14 83.2 145 42.1
FAN04G2054 Fragaria x ananassa HOM05D007468 ORTHO05D009051 5.1e-14 82.4 142 44.4
Peaxi162Scf00140g01310 Petunia axillaris HOM05D007468 ORTHO05D009051 5.1e-14 82.4 165 39.4
TWI36G1516 Tripterygium wilfordii HOM05D007468 ORTHO05D009051 5.1e-14 82.4 126 43.7
SGA_v2.0_scaffold334G49050 Striga asiatica HOM05D007468 ORTHO05D009051 8.8e-14 81.6 124 43.5
FAN18G4106 Fragaria x ananassa HOM05D007468 ORTHO05D009051 1.1e-13 81.3 142 45.1
Nitab4.5_0008750g0010 Nicotiana tabacum HOM05D007468 ORTHO05D009051 1.5e-13 80.9 173 35.3
Thecc.01G309900 Theobroma cacao HOM05D007468 ORTHO05D009051 1.5e-13 80.9 150 40.7
CsaV3_7G029790 Cucumis sativus L. HOM05D007468 ORTHO05D009051 2.6e-13 80.1 131 42.0
DCAR_005774 Daucus carota HOM05D007468 ORTHO05D009051 2.6e-13 80.1 159 37.1
Nitab4.5_0002828g0030 Nicotiana tabacum HOM05D007468 ORTHO05D009051 3.3e-13 79.7 175 33.7
RcHm_v2.0_Chr7g0241941 Rosa chinensis HOM05D007468 ORTHO05D009051 2.2e-12 77.0 140 44.3
ClCG10G011220 Citrullus lanatus HOM05D007468 ORTHO05D009051 3.7e-12 76.3 137 42.3
DCAR_002873 Daucus carota HOM05D007468 ORTHO05D009051 3.7e-12 76.3 158 39.2
Glyma.02G014400 Glycine max HOM05D007468 ORTHO05D009051 3.7e-12 76.3 145 42.1
PSO210G3413 Papaver somniferum HOM05D007468 ORTHO05D009051 3.7e-12 76.3 145 39.3
Duzib133G0259 Durio zibethinus HOM05D007468 ORTHO05D009051 6.3e-12 75.5 141 38.3
Atru.chr5.1053 Acer truncatum HOM05D007468 ORTHO05D009051 1.1e-11 74.7 137 39.4
ClCG09G005280 Citrullus lanatus HOM05D007468 ORTHO05D009051 1.1e-11 74.7 136 44.9
MELO3C015942.2 Cucumis melo HOM05D007468 ORTHO05D009051 1.1e-11 74.7 130 43.1
Nn3g21627 Nelumbo nucifera HOM05D007468 ORTHO05D009051 1.1e-11 74.7 141 38.3
Potri.014G123500 Populus trichocarpa HOM05D007468 ORTHO05D009051 1.1e-11 74.7 135 41.5
Ca_09200_v3 Cicer arietinum L. HOM05D007468 ORTHO05D009051 1.8e-11 73.9 147 38.8
Duzib138G0571 Durio zibethinus HOM05D007468 ORTHO05D009051 1.8e-11 73.9 147 41.5
Manes.01G225500 Manihot esculenta HOM05D007468 ORTHO05D009051 1.8e-11 73.9 131 43.5
Glyma.19G214800 Glycine max HOM05D007468 ORTHO05D009051 2.4e-11 73.6 139 40.3
Aqoxy2G02809 Aquilegia oxysepala HOM05D007468 ORTHO05D009051 4.1e-11 72.8 138 44.9
Psat3g020640 Pisum sativum HOM05D007468 ORTHO05D009051 4.1e-11 72.8 135 39.3
Lj1g0017695 Lotus japonicus HOM05D007468 ORTHO05D009051 5.3e-11 72.4 154 41.6
Actinidia27604 Actinidia chinensis HOM05D007468 ORTHO05D009051 1.2e-10 71.2 150 39.3
Gohir.D07G131600 Gossypium hirsutum HOM05D007468 ORTHO05D009051 1.2e-10 71.2 129 41.1
Gorai.001G142900 Gossypium raimondii HOM05D007468 ORTHO05D009051 1.2e-10 71.2 129 41.1
Lalb_Chr21g0309461 Lupinus albus HOM05D007468 ORTHO05D009051 2.0e-10 70.5 135 41.5
Phvul.001G211600 Phaseolus vulgaris HOM05D007468 ORTHO05D009051 2.0e-10 70.5 141 39.0
Sabra14G0091900 Salix brachista HOM05D007468 ORTHO05D009051 2.0e-10 70.5 131 38.9
Ca_10302_v3 Cicer arietinum L. HOM05D007468 ORTHO05D009051 2.6e-10 70.1 141 39.0
Phvul.007G216300 Phaseolus vulgaris HOM05D007468 ORTHO05D009051 3.4e-10 69.7 139 38.8
TAR365G0390 Trochodendron aralioides HOM05D007468 ORTHO05D009051 3.4e-10 69.7 132 37.1
Prupe.8G269500 Prunus persica HOM05D007468 ORTHO05D009051 5.9e-10 68.9 132 39.4
Glyma.10G015100 Glycine max HOM05D007468 ORTHO05D009051 7.7e-10 68.6 130 39.2
Gohir.A07G127300 Gossypium hirsutum HOM05D007468 ORTHO05D009051 7.7e-10 68.6 126 39.7
Sopen06g035970 Solanum pennellii HOM05D007468 ORTHO05D009051 7.7e-10 68.6 136 38.2
Psat5g096000 Pisum sativum HOM05D007468 ORTHO05D009051 1.3e-09 67.8 160 36.2
TPR.G20290 Trifolium pratense HOM05D007468 ORTHO05D009051 1.3e-09 67.8 158 36.1
CsaV3_4G001100 Cucumis sativus L. HOM05D007468 ORTHO05D009051 2.2e-09 67.0 136 39.0
CANSAT25G0675 Cannabis sativa HOM05D007468 ORTHO05D009051 3.8e-09 66.2 136 39.0
Glyma.03G218100 Glycine max HOM05D007468 ORTHO05D009051 3.8e-09 66.2 135 42.2
PGR044G1291 Punica granatum HOM05D007468 ORTHO05D009051 5.0e-09 65.9 149 38.9
Sed0007650 Sechium edule HOM05D007468 ORTHO05D009051 1.1e-08 64.7 163 36.2
Eucgr.H01069 Eucalyptus grandis HOM05D007468 ORTHO05D009051 1.9e-08 63.9 141 39.0
CiPaw.07G114800 Carya illinoinensis HOM05D007468 ORTHO05D009051 4.2e-08 62.8 129 43.4
Psat6g163440 Pisum sativum HOM05D007468 ORTHO05D009051 5.5e-08 62.4 130 35.4
Sed0000824 Sechium edule HOM05D007468 ORTHO05D009051 7.2e-08 62.0 136 41.9
Cfa005843 Carpinus fangiana HOM05D007468 ORTHO05D009051 9.4e-08 61.6 134 35.1
MELO3C017927.2 Cucumis melo HOM05D007468 ORTHO05D009051 9.4e-08 61.6 140 37.9
PSO357G0021 Papaver somniferum HOM05D007468 ORTHO05D009051 9.4e-08 61.6 129 34.9
Potri.002G199100 Populus trichocarpa HOM05D007468 ORTHO05D009051 1.2e-07 61.2 132 34.8
Ciclev10024491m.g Citrus clementina HOM05D007468 ORTHO05D009051 1.6e-07 60.8 133 36.1
Dinv10066 Davidia involucrata HOM05D007468 ORTHO05D009051 1.6e-07 60.8 91 46.2
Sc05g0000570 Simmondsia chinensis HOM05D007468 ORTHO05D009051 1.6e-07 60.8 135 35.6
Haze_05007 Corylus avellana HOM05D007468 ORTHO05D009051 2.7e-07 60.1 134 35.1
PSO170G3554 Papaver somniferum HOM05D007468 ORTHO05D009051 2.7e-07 60.1 129 34.1
Lj5g0007724 Lotus japonicus HOM05D007468 ORTHO05D009051 3.6e-07 59.7 141 36.2
Lalb_Chr15g0078361 Lupinus albus HOM05D007468 ORTHO05D009051 3.6e-07 59.7 169 33.1
VMungo0720G2271 Vigna mungo HOM05D007468 ORTHO05D009051 3.6e-07 59.7 145 35.2
Cpa.g.sc18.3 Carica papaya HOM05D007468 ORTHO05D009051 8.0e-07 58.5 136 36.0
Rhsim13G0006300 Rhododendron simsii HOM05D007468 ORTHO05D009051 8.0e-07 58.5 177 33.9
Lj1C20T9 Lonicera japonica HOM05D007468 ORTHO05D009051 1.0e-06 58.2 125 40.8
Haze_05006 Corylus avellana HOM05D007468 ORTHO05D009051 3.0e-06 56.6 134 33.6
MBI18_g24947_MAGBIO Magnolia biondii HOM05D007468 ORTHO05D009051 3.9e-06 56.2 127 33.1
BcaB03g15797 Brassica carinata HOM05D010095 ORTHO05D012148 6.7e-06 55.5 135 33.3
Migut.D00103 Erythranthe guttata HOM05D007468 ORTHO05D009051 6.7e-06 55.5 164 32.9


User provided reference genes

Program Settings