Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 5.4e-127 457.6 221 100.0
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 7.2e-47 191.4 222 52.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.8e-45 186.8 210 55.7
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.4e-44 182.6 214 52.3
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.4e-44 182.2 212 54.7
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.7e-44 181.8 210 53.3
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.5e-44 181.4 209 53.1
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 8.3e-43 177.9 213 52.6
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.1e-42 177.6 214 50.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.4e-42 177.2 214 50.5
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.4e-42 175.3 210 49.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 7.0e-42 174.9 219 51.6
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 5.0e-40 168.7 213 48.4
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.6e-40 167.9 224 48.7
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.5e-39 166.4 218 47.7
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.8e-38 162.9 207 50.2
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 6.1e-38 161.8 211 48.8
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 3.0e-37 159.5 218 47.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 4.0e-37 159.1 214 45.8
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 5.2e-37 158.7 213 45.1
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.2e-37 158.7 214 44.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 6.8e-37 158.3 221 46.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.7e-35 153.7 218 46.8
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.7e-35 153.7 220 45.0
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 3.7e-35 152.5 219 43.8
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.7e-35 152.5 211 45.0
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.8e-34 150.2 211 45.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-34 149.4 211 45.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.1e-34 149.1 213 47.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.4e-34 148.7 219 47.0
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 5.4e-34 148.7 220 45.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 7.0e-34 148.3 206 49.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 9.2e-34 147.9 223 43.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 9.2e-34 147.9 220 45.5
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 9.2e-34 147.9 210 45.7
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.2e-33 147.5 213 47.4
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.6e-33 145.6 222 43.7
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 4.6e-33 145.6 209 46.9
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.9e-33 145.2 206 45.6
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 7.8e-33 144.8 214 45.3
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.0e-32 144.4 211 45.0
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.3e-32 144.1 216 44.4
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.7e-32 143.7 213 45.1
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 3.9e-32 142.5 206 47.1
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 3.9e-32 142.5 218 44.0
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 5.0e-32 142.1 220 45.5
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.0e-32 142.1 218 43.6
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 5.0e-32 142.1 212 43.4
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 6.6e-32 141.7 205 45.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 6.6e-32 141.7 207 45.4
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.6e-32 141.7 218 44.5
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 6.6e-32 141.7 214 42.1
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.6e-32 141.4 221 42.5
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 8.6e-32 141.4 211 44.1
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.1e-31 141.0 205 42.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.9e-31 140.2 214 44.4
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.5e-31 139.8 212 43.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.5e-31 139.8 222 44.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 4.3e-31 139.0 212 40.6
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 7.3e-31 138.3 213 43.2
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.5e-31 137.9 218 42.2
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.1e-30 136.7 218 42.7
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.1e-30 136.7 213 43.7
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.8e-30 136.3 214 43.9
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 3.6e-30 136.0 217 41.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 3.6e-30 136.0 221 41.2
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.6e-30 136.0 221 41.2
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.6e-30 136.0 221 41.2
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.6e-30 136.0 222 40.5
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.7e-30 135.6 221 41.6
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 8.0e-30 134.8 209 43.5
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.4e-29 134.0 210 42.4
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.8e-29 133.7 210 43.8
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.3e-29 133.3 208 43.8
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.1e-29 132.9 205 45.4
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 3.1e-29 132.9 199 45.7
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.0e-29 132.5 221 42.1
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 4.0e-29 132.5 220 42.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 4.0e-29 132.5 200 45.5
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 5.2e-29 132.1 209 41.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 5.2e-29 132.1 210 43.3
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 6.8e-29 131.7 214 42.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 6.8e-29 131.7 210 42.4
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.8e-29 131.7 217 42.9
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 6.8e-29 131.7 209 43.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-29 131.3 220 42.7
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.0e-28 130.2 207 43.5
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.0e-28 130.2 213 43.2
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.0e-28 130.2 220 39.5
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-28 129.4 221 40.3
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.4e-28 129.4 209 41.6
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.5e-28 128.3 218 41.7
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.9e-27 126.3 218 44.5
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 6.4e-27 125.2 214 39.3
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 8.3e-27 124.8 208 42.3
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 8.3e-27 124.8 209 40.2
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.4e-26 124.0 222 40.1
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 3.2e-26 122.9 220 40.5
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.6e-25 120.6 211 38.4
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 2.0e-25 120.2 207 40.6
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 4.6e-25 119.0 211 38.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.6e-25 119.0 211 38.4
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 7.8e-25 118.2 211 37.9
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.8e-25 118.2 215 37.7
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.0e-24 117.9 211 37.9
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.0e-24 117.9 212 38.7
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.3e-24 117.5 215 39.5
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.7e-24 117.1 210 40.0
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.7e-24 117.1 212 37.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.7e-24 117.1 215 38.6
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.3e-24 116.7 211 37.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.0e-24 116.3 214 38.3
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 5.0e-24 115.5 211 37.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 5.0e-24 115.5 211 37.9
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 6.6e-24 115.2 212 39.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.6e-24 115.2 217 39.2
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-23 114.4 211 37.9
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.1e-23 114.4 211 37.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.5e-23 114.0 205 37.1
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-23 113.6 217 36.9
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.3e-23 112.8 190 40.5
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 3.3e-23 112.8 217 38.7
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.6e-22 110.5 211 37.4
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.6e-22 110.5 221 35.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 6.2e-22 108.6 206 40.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.8e-21 107.1 204 38.2
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 4.0e-21 105.9 212 37.7
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.8e-21 105.1 180 42.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.9e-21 104.8 295 30.2
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 8.9e-21 104.8 210 38.6
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.5e-20 104.0 113 54.0
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 4.4e-20 102.4 214 34.1
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 7.5e-20 101.7 214 35.0
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.7e-19 100.5 215 34.0
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.9e-19 99.8 215 35.3
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.9e-19 99.0 214 35.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 6.4e-19 98.6 212 35.8
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 6.4e-19 98.6 213 34.7
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 8.3e-19 98.2 200 36.0
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.3e-19 98.2 111 54.1
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-18 97.4 215 33.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-18 97.4 215 33.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-18 97.4 215 33.5
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-18 97.4 193 40.4
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.9e-18 97.1 221 35.7
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 2.4e-18 96.7 220 34.1
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-18 96.3 221 33.5
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 4.1e-18 95.9 212 35.4
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.6e-17 94.0 212 34.0
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.0e-17 92.0 203 35.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.0e-16 89.7 212 34.4
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.5e-15 87.4 234 35.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-14 84.3 204 35.8
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-14 83.6 188 35.1
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 6.2e-14 82.0 120 44.2
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 4.0e-13 79.3 209 34.4
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 8.9e-13 78.2 220 33.2
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-12 77.4 95 48.4
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 4.4e-12 75.9 217 28.6
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-12 75.9 108 45.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.8e-12 75.5 95 46.3
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.7e-11 73.9 203 31.5
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 2.2e-11 73.6 213 31.9
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.8e-11 72.8 117 41.0
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.4e-11 72.0 95 46.3
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-10 70.5 204 33.8
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.2e-10 69.7 203 31.0
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.7e-09 66.6 227 28.2
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.0e-08 64.7 213 29.6
Nn2g11432 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.1e-08 62.4 37 81.1
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.5e-07 60.1 237 26.2
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.3e-07 59.7 152 32.9
Aqoxy5G02997 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 5.6e-07 58.9 237 25.7
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.6e-07 58.2 115 33.9
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.1e-06 57.0 190 26.8
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-06 56.6 58 51.7
SEGI_15239 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.8e-06 56.6 222 25.7
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 8.1e-06 55.1 91 40.7
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 8.1e-06 55.1 199 25.6
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 8.1e-06 55.1 87 41.4


User provided reference genes

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