Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.2e-141 506.5 268 100.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 7.3e-94 347.8 269 69.9
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.1e-93 346.3 269 69.5
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 4.9e-90 335.1 248 71.0
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 6.4e-90 334.7 246 72.4
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.1e-89 334.0 265 68.7
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 3.5e-88 328.9 269 67.7
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.3e-87 327.0 243 70.8
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.3e-87 327.0 243 71.2
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 1.7e-87 326.6 245 70.2
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.3e-87 326.2 243 70.8
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 6.6e-87 324.7 246 69.1
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.5e-86 322.8 241 71.4
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 7.3e-86 321.2 292 62.0
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.6e-85 320.1 248 68.1
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 9.0e-84 314.3 242 68.2
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.5e-83 313.5 268 65.7
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 1.5e-83 313.5 241 70.1
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.5e-83 313.5 241 70.1
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.5e-83 313.5 241 70.1
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-82 310.5 241 69.7
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.7e-82 310.1 267 64.4
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.7e-82 310.1 241 69.7
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.7e-82 310.1 266 65.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.7e-82 310.1 247 68.8
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.4e-82 308.1 266 65.4
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.4e-82 308.1 267 64.0
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 8.4e-82 307.8 265 67.2
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.4e-81 307.0 232 71.6
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.9e-81 306.6 246 67.9
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 7.1e-81 304.7 224 70.1
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 7.1e-81 304.7 258 68.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 3.5e-80 302.4 267 63.3
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.5e-80 302.4 272 62.5
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 3.5e-80 302.4 315 59.0
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 3.5e-80 302.4 249 65.1
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 6.0e-80 301.6 270 66.3
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 6.0e-80 301.6 270 65.2
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 7.9e-80 301.2 249 64.7
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.3e-79 299.7 246 67.5
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 6.7e-79 298.1 271 64.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 6.7e-79 298.1 258 63.6
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.5e-78 297.0 250 63.6
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.9e-78 296.6 266 63.5
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 3.3e-78 295.8 246 65.4
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 7.4e-78 294.7 219 72.6
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.6e-77 293.5 243 67.9
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 2.8e-77 292.7 271 64.2
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.1e-76 290.8 248 64.5
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 3.1e-76 289.3 249 64.7
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.2e-75 287.3 251 62.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 3.4e-75 285.8 252 62.7
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.4e-75 285.8 277 59.6
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 4.5e-75 285.4 277 60.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 9.9e-75 284.3 266 60.5
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 1.3e-74 283.9 249 64.7
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.2e-74 283.1 269 59.5
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 2.5e-73 279.6 260 60.0
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 7.1e-73 278.1 282 57.8
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 8.7e-71 271.2 215 67.9
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.9e-70 270.0 264 57.2
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 3.3e-70 269.2 235 63.4
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 4.3e-70 268.9 234 63.7
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.3e-69 267.3 248 62.9
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.1e-69 266.5 269 58.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 2.1e-69 266.5 222 67.6
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 6.9e-68 261.5 248 62.1
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.6e-67 259.6 278 55.4
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.5e-67 258.8 295 52.9
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 4.5e-67 258.8 269 58.7
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.6e-67 258.1 255 62.0
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.3e-66 257.3 237 62.9
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.7e-66 256.9 218 67.0
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.2e-66 256.5 251 59.4
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.9e-66 255.4 255 60.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 5.5e-65 251.9 245 59.2
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 7.1e-65 251.5 257 58.0
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.1e-65 251.5 255 60.4
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.5e-64 249.2 253 57.3
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.3e-63 247.3 248 58.1
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 3.0e-63 246.1 192 71.4
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 1.6e-61 240.4 283 51.9
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.8e-61 238.8 281 51.6
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.0e-58 231.1 270 54.1
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 1.3e-58 230.7 264 57.2
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 8.5e-58 228.0 235 57.4
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.4e-57 227.3 222 57.7
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 3.2e-57 226.1 272 52.9
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 5.5e-57 225.3 425 40.5
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.2e-56 224.2 265 54.3
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.6e-56 223.8 188 65.4
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 2.7e-56 223.0 246 54.5
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.7e-56 223.0 197 62.9
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.6e-56 222.2 228 56.1
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.9e-56 221.5 217 58.1
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 3.0e-55 219.5 239 54.0
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 5.1e-55 218.8 195 61.5
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.5e-54 217.2 203 60.1
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.7e-54 215.3 247 54.7
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 7.4e-54 214.9 247 55.9
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 7.4e-54 214.9 247 55.9
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 9.7e-54 214.5 189 65.6
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 9.7e-54 214.5 189 65.6
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 9.7e-54 214.5 189 65.6
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.8e-53 213.0 197 60.4
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 6.3e-53 211.8 201 59.7
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 4.1e-52 209.1 183 64.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 4.7e-48 195.7 186 61.8
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.8e-45 186.4 311 44.4
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.7e-45 186.0 185 57.3
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.4e-44 184.1 237 49.8
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.5e-43 180.6 184 58.2
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 4.5e-43 179.1 266 44.7
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 2.0e-38 163.7 239 46.9
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 4.1e-36 156.0 163 61.3
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.2e-35 154.5 245 43.7
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.2e-32 144.4 187 50.3
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 6.1e-32 142.1 150 53.3
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.7e-27 126.7 126 58.7
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 5.0e-26 122.5 214 43.9
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 2.7e-24 116.7 158 46.8
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 2.3e-23 113.6 218 42.7
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 5.7e-22 109.0 211 43.1
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 9.1e-20 101.7 56 85.7
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.8e-15 87.4 92 64.1
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 2.0e-14 84.0 86 55.8
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 5.7e-14 82.4 155 40.6
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.2e-13 80.5 141 45.4
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.0e-10 71.6 98 42.9
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.3e-10 70.5 78 50.0
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 6.8e-07 58.9 45 62.2
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 1.2e-06 58.2 43 62.8
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 1.5e-06 57.8 278 28.1
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 2.6e-06 57.0 46 60.9


User provided reference genes

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