Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 2.1e-30 135.2 76 100.0
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.0e-25 118.6 61 86.9
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.0e-25 117.1 61 88.5
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.5e-23 112.5 63 85.7
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.5e-23 111.7 61 85.2
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 4.3e-23 110.9 76 72.4
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 4.3e-23 110.9 76 72.4
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 4.3e-23 110.9 60 85.0
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 5.6e-23 110.5 62 85.5
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 7.3e-23 110.2 76 71.1
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 7.3e-23 110.2 76 71.1
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 7.3e-23 110.2 76 72.4
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.6e-22 109.0 62 83.9
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.1e-22 108.6 76 72.4
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.1e-22 108.6 64 84.4
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.8e-22 108.2 74 70.3
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 2.8e-22 108.2 59 83.1
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.8e-22 108.2 64 81.2
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 3.6e-22 107.8 61 78.7
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 4.7e-22 107.5 61 80.3
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.2e-22 107.1 76 71.1
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.4e-21 105.9 71 70.4
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.8e-21 105.5 73 71.2
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.8e-21 105.5 76 68.4
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.8e-21 105.5 60 81.7
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 2.3e-21 105.1 76 69.7
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.3e-21 105.1 61 80.3
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 3.1e-21 104.8 76 67.1
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 3.1e-21 104.8 69 73.9
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 5.2e-21 104.0 76 80.3
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 5.2e-21 104.0 76 80.3
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 5.2e-21 104.0 76 80.3
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 5.2e-21 104.0 76 68.4
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 5.2e-21 104.0 76 68.4
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 5.2e-21 104.0 76 68.4
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 6.8e-21 103.6 76 77.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 6.8e-21 103.6 59 78.0
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 2.0e-20 102.1 61 78.7
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.6e-20 101.7 61 75.4
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.6e-20 101.7 59 78.0
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 2.6e-20 101.7 60 75.0
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 3.4e-20 101.3 57 80.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 3.4e-20 101.3 57 80.7
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 3.4e-20 101.3 59 79.7
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 4.4e-20 100.9 62 74.2
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 5.8e-20 100.5 53 84.9
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.5e-20 100.1 61 70.5
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 9.9e-20 99.8 61 75.4
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.3e-19 99.4 61 77.0
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.3e-19 99.4 55 81.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.7e-19 99.0 61 72.1
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 2.9e-19 98.2 64 71.9
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 3.7e-19 97.8 61 73.8
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 3.7e-19 97.8 73 64.4
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.7e-19 97.8 73 64.4
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 4.9e-19 97.4 61 73.8
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 4.9e-19 97.4 61 73.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 4.9e-19 97.4 61 73.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 4.9e-19 97.4 61 73.8
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 4.9e-19 97.4 63 71.4
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 4.9e-19 97.4 61 72.1
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 6.4e-19 97.1 61 73.8
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 8.3e-19 96.7 73 63.0
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 8.3e-19 96.7 73 63.0
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 8.3e-19 96.7 59 74.6
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 8.3e-19 96.7 59 74.6
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 8.3e-19 96.7 59 74.6
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 8.3e-19 96.7 59 74.6
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 8.3e-19 96.7 59 74.6
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.3e-19 96.7 54 79.6
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-18 96.3 61 72.1
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-18 96.3 73 63.0
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.4e-18 95.9 59 72.9
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.4e-18 95.9 55 74.5
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.9e-18 95.5 54 79.6
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.9e-18 95.5 57 75.4
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.4e-18 95.1 59 71.2
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 2.4e-18 95.1 73 61.6
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 3.2e-18 94.7 54 79.6
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 3.2e-18 94.7 57 75.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 3.2e-18 94.7 57 75.4
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.2e-18 94.7 61 68.9
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 4.1e-18 94.4 73 61.6
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 4.1e-18 94.4 74 62.2
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 5.4e-18 94.0 47 91.5
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 7.1e-18 93.6 67 65.7
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 7.1e-18 93.6 53 79.2
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.2e-17 92.8 63 68.3
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.6e-17 92.4 59 71.2
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.6e-17 92.4 61 68.9
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 1.6e-17 92.4 57 73.7
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.1e-17 92.0 57 71.9
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.7e-17 91.7 53 79.2
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 6.0e-17 90.5 50 80.0
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.0e-16 89.7 46 84.8
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.0e-16 89.7 52 76.9
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.0e-16 89.7 54 74.1
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.3e-16 89.4 54 77.8
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 1.7e-16 89.0 54 74.1
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 3.0e-16 88.2 54 75.9
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.9e-16 87.8 74 68.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.9e-16 87.8 74 68.9
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 3.9e-16 87.8 54 75.9
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.9e-15 85.5 57 71.9
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.9e-15 85.5 57 71.9
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.9e-15 85.5 55 70.9
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 3.3e-15 84.7 54 74.1
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 3.3e-15 84.7 47 78.7
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 5.6e-15 84.0 56 69.6
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.6e-14 82.4 54 68.5
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 2.8e-14 81.6 73 56.2
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.8e-14 81.6 50 74.0
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.6e-14 81.3 54 70.4
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 4.7e-14 80.9 49 69.4
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 1.3e-11 72.8 51 66.7
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.3e-11 72.8 45 68.9
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 3.8e-11 71.2 37 81.1
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 4.9e-11 70.9 56 57.1
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 1.3e-08 62.8 42 61.9
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 3.0e-08 61.6 30 83.3
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 5.1e-08 60.8 41 61.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 8.7e-08 60.1 50 54.0
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 5.6e-07 57.4 53 49.1
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 7.3e-07 57.0 48 54.2
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.6e-06 54.7 41 58.5
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 6.2e-06 53.9 53 43.4
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 6.2e-06 53.9 56 48.2
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 6.2e-06 53.9 56 48.2


User provided reference genes

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