Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 0.0e+00 1124.0 576 100.0
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.2e-271 939.5 564 83.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 3.0e-270 934.9 553 83.7
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.1e-270 934.1 564 83.3
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 3.7e-268 927.9 558 83.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 8.2e-268 926.8 566 81.8
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 2.4e-267 925.2 570 82.5
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 5.3e-267 924.1 558 82.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 5.9e-266 920.6 555 82.3
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.0e-265 919.8 560 82.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.7e-265 919.1 565 82.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.7e-265 919.1 552 82.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.1e-264 916.4 564 81.9
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.1e-264 916.4 559 81.9
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 3.2e-264 914.8 571 80.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 3.2e-264 914.8 583 80.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 7.2e-264 913.7 569 80.8
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.2e-263 912.9 537 84.7
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 2.1e-263 912.1 554 82.7
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.6e-263 911.4 540 84.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.8e-262 909.1 567 80.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.3e-262 908.7 578 79.9
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 3.0e-262 908.3 561 81.1
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 3.9e-262 907.9 573 79.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.9e-262 907.9 552 82.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 6.7e-262 907.1 552 82.4
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 8.8e-262 906.7 569 80.1
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.0e-261 905.6 561 81.3
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 9.7e-261 903.3 546 83.7
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.7e-260 902.5 537 84.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 8.2e-260 900.2 570 78.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.8e-259 899.0 531 83.4
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 9.1e-259 896.7 537 82.5
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.6e-258 896.0 559 81.4
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.0e-258 895.6 552 82.2
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 3.5e-258 894.8 559 81.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 5.9e-258 894.0 555 79.8
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.7e-257 892.5 532 83.1
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.2e-255 886.3 521 84.1
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.2e-255 886.3 516 84.7
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 3.6e-255 884.8 552 79.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.6e-255 884.8 564 78.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.7e-255 884.4 506 86.8
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 6.1e-255 884.0 561 79.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-254 883.2 562 78.8
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.8e-254 882.5 565 79.5
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.8e-254 882.5 570 78.6
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 4.0e-254 881.3 574 78.2
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 4.0e-254 881.3 561 79.1
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 6.7e-254 880.6 556 79.5
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 6.7e-254 880.6 563 78.3
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.5e-253 879.4 575 77.6
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 4.4e-253 877.9 572 78.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 9.7e-253 876.7 558 78.7
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 9.7e-253 876.7 532 82.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.7e-252 875.9 534 82.0
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.7e-252 875.9 550 79.6
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.7e-252 875.9 528 82.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.2e-252 875.5 558 78.9
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-252 875.5 576 77.3
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-252 875.5 576 77.3
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 2.2e-252 875.5 576 77.3
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 2.8e-252 875.2 565 77.9
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 2.8e-252 875.2 565 77.9
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.7e-252 874.8 520 82.7
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.1e-251 873.2 558 79.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.8e-251 872.5 573 77.7
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 3.1e-251 871.7 573 77.7
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 5.3e-251 870.9 517 82.6
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.1e-251 870.2 558 79.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 9.1e-251 870.2 588 75.7
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-250 869.4 576 76.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.6e-250 869.4 539 80.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.6e-250 869.4 572 77.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.0e-250 869.0 565 78.1
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-250 869.0 565 77.9
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.0e-250 869.0 524 81.9
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.9e-250 867.5 568 76.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 5.9e-250 867.5 576 76.0
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 5.9e-250 867.5 569 77.3
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.5e-249 864.0 541 80.2
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 6.5e-249 864.0 521 82.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.1e-248 863.2 571 78.1
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-248 862.8 575 76.3
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.9e-248 862.4 555 77.3
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.7e-247 857.8 575 76.5
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 8.0e-247 857.1 534 80.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.0e-246 855.1 563 77.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.6e-245 852.0 522 81.0
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 3.4e-245 851.7 558 77.8
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.7e-244 849.4 544 77.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.7e-244 849.4 571 75.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.2e-244 849.0 537 80.3
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 8.3e-244 847.0 548 77.7
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.0e-242 842.4 565 75.2
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 3.3e-240 835.1 552 75.7
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 5.2e-238 827.8 506 81.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 9.8e-237 823.5 489 82.4
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-236 823.2 569 73.1
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-235 820.1 562 75.6
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.5e-232 809.7 471 85.4
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 8.0e-231 803.9 473 85.2
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 6.2e-223 777.7 554 73.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.0e-222 775.0 542 71.6
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 4.9e-220 768.1 523 73.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.9e-220 768.1 484 79.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.4e-219 766.5 494 75.1
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.2e-215 753.4 503 72.4
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.8e-214 749.6 516 71.3
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.3e-209 733.4 424 84.0
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 6.2e-207 724.5 452 80.1
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.1e-206 723.8 565 69.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 6.4e-204 714.5 416 86.5
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.2e-203 712.2 537 69.1
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.6e-202 709.9 565 66.7
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.0e-201 707.2 553 65.6
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.1e-200 703.7 543 68.0
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.7e-193 679.9 579 64.9
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 5.1e-193 678.3 497 67.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.1e-186 656.4 460 70.2
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 5.1e-185 651.7 530 64.7
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.7e-183 645.6 502 62.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-164 583.6 543 59.3
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 6.5e-164 581.6 502 62.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 8.5e-164 581.3 318 89.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.1e-160 570.9 536 57.6
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.8e-159 565.5 348 84.2
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.7e-157 558.1 462 61.3
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.7e-154 548.9 492 59.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-153 547.4 492 59.1
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-153 546.2 490 59.0
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.5e-136 490.7 331 72.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-129 467.6 489 53.0
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.5e-123 447.6 620 47.3
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 4.2e-123 446.0 500 47.6
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.8e-105 387.5 531 40.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.0e-97 359.8 429 49.7
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 9.9e-88 328.6 447 40.5
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-85 320.5 347 54.2
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.8e-72 276.2 163 87.1
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.1e-70 271.9 185 69.7
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.6e-69 266.5 557 36.6
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.0e-60 238.8 278 48.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.7e-53 214.2 401 38.4
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.6e-50 204.9 129 80.6
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.3e-49 199.9 504 32.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-42 178.7 105 80.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 6.9e-41 172.9 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 6.5e-39 166.4 115 78.3
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.1e-35 155.6 143 53.8
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-31 142.5 80 85.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.6e-29 134.0 93 78.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 6.7e-28 129.8 91 74.7
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.0e-20 105.9 89 62.9
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.8e-20 105.1 65 80.0
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 6.3e-18 96.7 71 70.4
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-16 91.3 87 44.8
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-16 91.3 54 83.3
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.7e-16 89.7 50 88.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.0e-15 89.4 56 82.1
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.8e-12 78.6 53 71.7
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.8e-12 76.6 49 77.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.2e-11 75.9 98 48.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.4e-11 73.9 89 48.3
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.3e-10 72.4 152 38.2
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 6.3e-10 70.1 43 76.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 3.1e-09 67.8 57 59.6
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 2.7e-08 64.7 52 61.5


User provided reference genes

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