Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 6.1e-186 654.1 344 100.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.5e-152 543.1 345 81.7
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 7.6e-152 540.8 345 81.2
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.9e-151 538.1 344 79.1
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.9e-151 538.1 344 79.1
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 6.4e-151 537.7 345 80.9
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 7.1e-150 534.3 341 79.8
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.1e-149 532.7 345 81.2
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.7e-149 532.3 345 79.7
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.0e-148 530.4 345 80.0
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 8.7e-148 527.3 345 79.4
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.5e-147 526.6 388 72.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 4.3e-147 525.0 346 79.2
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.6e-147 524.6 346 78.0
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 9.6e-147 523.9 346 76.9
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 3.6e-146 521.9 345 77.4
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 3.6e-146 521.9 343 78.4
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 6.2e-146 521.2 346 76.6
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 8.1e-146 520.8 345 77.1
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 8.1e-146 520.8 342 77.8
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.8e-145 519.6 324 82.1
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.4e-145 519.2 345 76.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 4.0e-145 518.5 345 78.6
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.9e-145 517.7 345 77.7
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 9.0e-145 517.3 347 77.5
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 9.0e-145 517.3 344 77.3
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.0e-144 516.2 345 75.9
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 2.6e-144 515.8 343 77.6
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 7.6e-144 514.2 345 78.0
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.3e-143 513.5 345 76.2
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.3e-143 513.5 345 77.7
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 6.4e-143 511.1 343 75.5
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 6.4e-143 511.1 345 77.4
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.4e-143 511.1 344 76.5
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 6.4e-143 511.1 348 77.3
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.4e-142 510.0 344 75.6
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 3.2e-142 508.8 345 75.7
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 3.2e-142 508.8 345 75.7
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 4.2e-142 508.4 349 75.4
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.2e-142 508.4 345 75.7
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 5.4e-142 508.1 343 75.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 7.1e-142 507.7 343 74.6
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 7.1e-142 507.7 346 76.3
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.6e-141 506.5 343 74.6
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.6e-141 506.5 345 74.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 2.1e-141 506.1 343 75.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.1e-141 506.1 345 74.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 2.1e-141 506.1 343 74.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.6e-141 505.0 345 76.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 7.9e-141 504.2 342 74.6
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.0e-140 503.8 346 75.7
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 2.3e-140 502.7 343 74.3
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 2.3e-140 502.7 343 74.3
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 75.2
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 6.6e-140 501.1 343 74.1
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 6.6e-140 501.1 343 74.1
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 6.6e-140 501.1 343 74.1
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.6e-140 501.1 345 73.6
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.9e-139 499.6 341 73.9
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 3.3e-139 498.8 341 73.6
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 74.1
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 3.3e-139 498.8 345 73.3
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.3e-139 498.4 345 73.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 4.3e-139 498.4 343 74.3
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.6e-139 498.0 343 74.1
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 7.3e-139 497.7 355 72.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.3e-138 496.9 345 76.2
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 2.1e-138 496.1 343 74.3
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 2.8e-138 495.7 341 73.0
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.3e-137 491.5 344 72.7
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.5e-136 490.0 345 75.7
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 2.0e-136 489.6 355 71.0
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.6e-136 489.2 345 74.5
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 3.4e-136 488.8 347 74.4
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 5.8e-136 488.0 339 73.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 5.8e-136 488.0 345 72.8
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 7.6e-136 487.6 347 74.4
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.4e-134 482.6 367 71.4
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 7.1e-134 481.1 343 73.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.7e-133 479.2 336 70.8
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 6.0e-133 478.0 345 71.9
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 6.0e-133 478.0 345 72.2
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 2.3e-132 476.1 351 72.1
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.5e-131 473.4 343 72.3
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 9.6e-131 470.7 337 73.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.3e-130 470.3 358 69.6
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.0e-127 460.7 345 71.6
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 2.9e-127 459.1 309 74.8
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.4e-126 456.8 336 72.0
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 3.2e-126 455.7 415 61.0
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.7e-125 452.6 313 76.7
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.7e-125 452.6 336 69.0
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 6.0e-125 451.4 308 77.6
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 7.9e-125 451.1 344 66.9
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 1.0e-124 450.7 272 82.4
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.8e-122 442.6 295 80.3
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 6.2e-122 441.4 400 61.2
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.7e-119 433.3 345 69.3
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 3.8e-119 432.2 272 79.0
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 6.1e-117 424.9 308 71.8
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.5e-115 420.2 345 67.0
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.1e-113 414.1 343 66.2
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 2.5e-110 402.9 329 67.8
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 7.2e-110 401.4 418 55.5
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.0e-108 397.5 345 63.5
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.8e-106 388.7 345 62.6
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 9.1e-105 384.4 292 71.2
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 7.2e-102 374.8 384 56.0
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.7e-101 372.9 222 84.7
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 6.3e-98 361.7 343 59.5
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 9.1e-97 357.8 222 77.5
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.0e-92 342.8 435 50.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-91 340.5 345 58.6
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.5e-88 329.3 341 56.3
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.8e-87 325.9 248 69.8
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.5e-87 324.7 204 78.4
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 3.4e-83 312.8 312 51.9
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 5.5e-78 295.4 248 63.3
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 7.0e-73 278.5 249 61.8
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.7e-71 273.9 169 80.5
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 6.1e-69 265.4 200 69.5
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 8.0e-69 265.0 274 49.6
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.4e-59 232.6 254 53.5
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 6.0e-56 222.2 144 79.2
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 2.5e-54 216.9 238 55.9
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 5.2e-52 209.1 158 63.9
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 7.1e-49 198.7 343 38.2
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.3e-47 194.5 165 65.5
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 5.1e-47 192.6 194 54.6
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.6e-45 187.6 131 73.3
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.2e-42 177.2 184 58.2
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.9e-42 176.0 110 81.8
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.1e-41 172.2 350 34.0
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 4.6e-40 169.5 318 34.9
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 5.1e-39 166.0 323 32.8
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.6e-37 161.0 124 71.0
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 7.3e-30 135.6 113 63.7
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 3.8e-26 123.2 74 81.1
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 1.8e-20 104.4 106 60.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.0e-20 103.2 95 63.2
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-19 101.7 95 57.9
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 2.6e-19 100.5 73 64.4


User provided reference genes

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