Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 1.5e-175 619.4 311 100.0
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 2.1e-108 396.4 318 62.3
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.0e-107 394.0 316 63.0
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.8e-107 393.3 316 62.3
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 8.8e-107 391.0 317 60.6
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 8.8e-107 391.0 316 63.9
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 3.7e-105 385.6 317 63.4
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 3.7e-105 385.6 317 63.4
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 4.1e-104 382.1 317 62.8
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 5.0e-102 375.2 323 59.8
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 1.6e-100 370.2 319 61.4
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 6.1e-100 368.2 317 59.0
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 3.0e-99 365.9 319 59.6
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 3.0e-99 365.9 319 61.4
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 5.1e-99 365.2 316 60.1
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 1.1e-98 364.0 314 60.2
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 1.1e-98 364.0 322 58.4
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 2.0e-98 363.2 324 58.6
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 3.3e-98 362.5 317 59.9
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 5.7e-98 361.7 314 60.5
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.3e-97 360.5 324 57.7
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 1.7e-97 360.1 326 60.4
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 6.3e-97 358.2 320 59.1
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 6.3e-97 358.2 321 57.6
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.4e-96 357.1 314 59.6
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 2.4e-96 356.3 319 59.9
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 4.1e-96 355.5 320 59.1
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 7.0e-96 354.8 318 61.0
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 2.0e-95 353.2 314 58.9
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 2.6e-95 352.8 312 58.0
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 3.5e-95 352.4 316 59.5
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.3e-94 350.5 324 54.3
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 3.2e-93 345.9 314 55.4
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 4.2e-93 345.5 316 57.9
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 1.2e-92 344.0 365 52.1
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 2.7e-92 342.8 318 57.2
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 2.3e-91 339.7 320 56.6
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 3.0e-91 339.3 324 55.6
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 5.2e-91 338.6 316 56.3
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 6.7e-91 338.2 318 56.0
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 6.7e-91 338.2 314 59.9
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 1.1e-90 337.4 319 55.5
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 1.1e-90 337.4 315 56.2
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.7e-89 333.6 315 54.0
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 2.8e-89 332.8 327 55.7
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 1.1e-88 330.9 319 55.8
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 7.0e-88 328.2 316 52.5
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 1.6e-87 327.0 316 53.2
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 4.5e-87 325.5 312 53.2
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 4.5e-87 325.5 319 53.6
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 1.0e-86 324.3 316 52.8
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 3.8e-86 322.4 313 54.0
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 5.0e-86 322.0 314 53.5
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 5.0e-86 322.0 392 48.5
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 1.1e-85 320.9 319 51.7
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 1.5e-85 320.5 321 51.4
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 3.2e-85 319.3 321 53.9
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 3.2e-85 319.3 314 52.5
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 3.2e-85 319.3 321 54.2
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 4.2e-85 318.9 319 53.3
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 5.5e-85 318.5 314 52.9
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 2.1e-84 316.6 323 51.4
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 3.6e-84 315.8 315 53.0
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 6.1e-84 315.1 322 53.1
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 8.0e-84 314.7 322 52.8
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 1.8e-83 313.5 319 53.3
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 5.2e-83 312.0 312 51.9
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 1.2e-82 310.8 312 51.9
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 3.4e-82 309.3 312 51.9
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 5.7e-82 308.5 314 51.9
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 7.5e-82 308.1 319 53.0
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 2.8e-81 306.2 312 51.6
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 3.7e-81 305.8 321 51.4
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 6.3e-81 305.1 312 51.6
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-80 304.3 314 51.6
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 1.1e-80 304.3 322 53.1
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 1.4e-80 303.9 314 51.6
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 1.4e-80 303.9 318 52.2
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 4.1e-80 302.4 438 43.2
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 9.1e-80 301.2 317 52.4
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 1.2e-79 300.8 316 51.6
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 7.7e-79 298.1 312 51.0
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 3.2e-77 292.7 333 47.1
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 2.7e-76 289.7 269 55.8
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 4.0e-75 285.8 286 51.4
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 5.2e-75 285.4 321 49.5
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 1.3e-73 280.8 336 47.0
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 1.4e-72 277.3 312 48.4
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 2.4e-72 276.6 317 49.5
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 9.1e-72 274.6 265 55.5
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 2.0e-71 273.5 236 58.5
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 1.0e-70 271.2 321 46.7
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.3e-70 270.0 312 47.8
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 8.6e-70 268.1 229 60.3
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 9.5e-69 264.6 328 47.9
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 7.5e-66 255.0 234 54.3
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.7e-65 253.8 324 45.7
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.8e-64 250.4 276 47.5
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 1.0e-62 244.6 299 46.2
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.3e-62 244.2 312 48.1
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.7e-62 243.8 313 46.0
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.9e-62 243.0 259 52.5
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 2.9e-62 243.0 258 52.7
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 1.5e-61 240.7 264 47.7
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.9e-61 240.4 290 49.7
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 2.8e-60 236.5 249 48.2
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.0e-58 230.3 390 39.0
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 2.0e-58 230.3 341 41.9
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 2.0e-58 230.3 334 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 9.8e-58 228.0 338 40.2
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.5e-53 214.2 321 38.6
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 7.3e-53 211.8 327 41.6
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 9.5e-53 211.5 222 52.3
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.2e-52 211.1 325 42.2
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 2.1e-52 210.3 310 39.4
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 1.1e-51 208.0 163 60.7
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 4.0e-51 206.1 275 44.0
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 9.8e-50 201.4 311 38.6
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 7.6e-42 175.3 315 37.1
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 5.4e-40 169.1 196 47.4
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 4.6e-39 166.0 234 41.9
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.2e-36 157.9 266 41.4
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 1.4e-19 101.3 55 81.8
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.0e-14 85.1 69 63.8
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 5.1e-14 82.8 69 62.3
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 3.1e-11 73.6 46 71.7
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 3.8e-09 66.6 48 66.7


User provided reference genes

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