Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.0e-276 956.1 465 100.0
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.1e-108 396.0 476 47.9
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.6e-104 384.0 481 47.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.8e-103 380.6 480 46.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.9e-103 379.4 449 47.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 8.8e-103 378.3 469 46.1
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 9.7e-102 374.8 471 46.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.7e-101 374.0 469 46.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.7e-101 374.0 470 45.5
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.8e-101 373.2 449 47.9
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.1e-100 371.3 486 44.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.0e-98 362.5 444 46.2
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.1e-96 357.1 491 42.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.0e-96 355.1 429 48.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.7e-91 338.6 487 42.1
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.3e-90 337.8 490 42.0
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.8e-90 336.3 491 40.1
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 6.5e-90 335.5 495 41.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-88 330.9 483 40.8
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 2.7e-88 330.1 485 41.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.6e-88 329.7 483 40.6
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.6e-88 329.7 456 44.1
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.0e-87 326.6 484 41.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.6e-86 323.6 494 38.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.4e-84 317.8 485 41.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.4e-84 317.0 451 39.5
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.1e-84 316.2 456 42.1
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.6e-80 304.3 470 39.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.6e-80 304.3 484 39.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.8e-79 300.8 494 39.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.0e-78 297.4 466 39.7
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.4e-78 296.6 472 38.6
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 4.9e-77 292.7 495 40.0
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 6.3e-77 292.4 491 36.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.2e-75 288.1 480 38.8
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-75 288.1 460 37.6
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 6.6e-74 282.3 447 37.8
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.5e-73 281.2 462 36.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.3e-73 280.0 486 36.4
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.6e-73 279.3 338 45.6
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.1e-72 277.3 333 46.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.8e-72 276.9 459 36.6
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.8e-72 276.9 459 36.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.8e-72 276.9 459 37.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.7e-72 276.2 459 35.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 5.2e-71 272.7 453 36.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.2e-71 272.7 490 36.3
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 5.7e-70 269.2 491 35.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 5.7e-70 269.2 459 34.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 5.7e-70 269.2 465 36.3
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 5.7e-70 269.2 466 35.0
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.9e-69 266.9 446 38.1
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 6.4e-69 265.8 453 37.3
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 8.3e-69 265.4 520 35.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.4e-68 264.6 452 37.4
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 7.0e-68 262.3 489 36.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.6e-67 261.2 490 35.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.0e-67 260.8 475 35.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.0e-67 260.8 468 34.8
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.0e-66 256.9 338 41.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 8.6e-66 255.4 453 35.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 8.6e-66 255.4 497 34.4
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-65 255.0 477 34.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.5e-65 254.6 487 34.7
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 6.2e-64 249.2 471 35.2
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.2e-64 249.2 486 33.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.0e-63 248.4 367 39.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.0e-63 248.4 495 34.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.0e-63 248.4 495 34.1
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 8.9e-63 245.4 487 32.9
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 3.4e-62 243.4 478 34.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.4e-62 243.4 492 35.8
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 4.4e-62 243.0 466 33.5
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.7e-61 241.1 486 33.1
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.9e-61 240.4 362 40.1
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 3.7e-61 240.0 511 34.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.7e-61 240.0 498 31.7
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.9e-61 239.6 353 38.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.4e-61 239.2 469 34.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.3e-61 238.8 465 33.5
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.4e-60 237.3 367 38.7
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.4e-60 237.3 480 36.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 9.2e-60 235.3 503 31.4
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 3.5e-59 233.4 370 37.8
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.8e-59 232.3 493 32.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.3e-58 230.7 501 32.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 3.9e-58 229.9 361 36.8
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.9e-57 227.6 473 32.6
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.9e-57 227.6 364 37.1
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.3e-57 226.5 361 36.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 5.6e-57 226.1 494 32.0
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 9.5e-57 225.3 440 35.5
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.2e-56 224.9 360 36.7
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.1e-56 224.2 356 37.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 3.6e-56 223.4 493 33.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.7e-56 223.0 364 36.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 6.2e-56 222.6 370 37.0
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 8.1e-56 222.2 473 35.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.1e-55 221.9 455 33.8
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.8e-55 221.1 438 33.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-55 220.7 457 33.7
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.3e-55 220.7 492 31.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.1e-55 220.3 489 32.9
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 4.0e-55 219.9 460 34.1
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.0e-55 219.9 436 33.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 5.2e-55 219.5 455 35.4
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 8.9e-55 218.8 355 38.3
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 8.9e-55 218.8 463 35.9
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.9e-55 218.8 361 36.3
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.5e-54 218.0 383 35.5
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.6e-54 217.2 474 36.5
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-54 217.2 495 31.1
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 7.5e-54 215.7 230 50.4
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 9.8e-54 215.3 493 30.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.7e-53 214.5 362 38.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.9e-52 211.1 484 32.2
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.1e-52 209.9 502 31.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.1e-51 207.6 486 34.8
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.5e-51 206.8 523 30.2
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.8e-51 205.7 462 31.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.7e-50 204.5 473 34.9
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.7e-50 204.5 493 31.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.7e-50 204.5 475 31.4
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.9e-50 203.4 373 35.4
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.5e-49 201.4 443 35.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 2.5e-49 200.7 474 34.2
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 7.3e-49 199.1 459 31.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 6.2e-48 196.1 442 34.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 8.1e-48 195.7 443 35.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-47 194.5 369 34.1
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 6.8e-47 192.6 489 29.9
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.8e-47 192.6 489 30.1
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 8.9e-47 192.2 458 31.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-46 191.8 481 31.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.4e-46 190.3 408 32.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.3e-45 188.3 478 29.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-45 187.6 360 34.2
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.3e-42 177.6 213 45.5
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.1e-41 175.3 287 34.1
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.5e-41 174.1 485 31.5
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 9.6e-41 172.2 462 28.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-40 171.8 268 40.7
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.6e-40 171.4 273 39.2
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 3.6e-40 170.2 219 45.2
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 5.8e-38 162.9 234 40.2
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 5.8e-38 162.9 234 40.2
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.8e-38 162.9 234 40.2
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.9e-37 159.8 487 27.9
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 6.0e-35 152.9 252 35.3
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.8e-32 143.3 223 37.2
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 5.3e-31 139.8 237 38.0
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 5.8e-30 136.3 299 32.8
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 7.6e-30 136.0 271 31.7
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.2e-29 134.4 286 31.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 9.3e-28 129.0 270 33.0
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-25 122.1 215 36.7
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 2.2e-21 107.8 243 30.5
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.4e-21 105.9 258 28.7
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.4e-20 104.4 362 28.7
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.2e-19 102.1 189 36.0
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 7.9e-19 99.4 146 42.5
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-18 97.8 176 34.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 9.6e-17 92.4 136 38.2
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.4e-15 88.6 242 28.5
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 6.9e-15 86.3 130 36.9
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-13 81.6 236 26.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.8e-13 80.5 138 34.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 4.2e-12 77.0 187 33.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.5e-12 76.6 158 32.9
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 8.7e-10 69.3 106 32.1
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 5.7e-09 66.6 146 32.2
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 9.0e-07 59.3 76 36.8


User provided reference genes

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