Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 4.5e-144 514.6 269 100.0
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 7.8e-112 407.5 247 80.6
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.4e-108 396.7 270 72.6
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 2.4e-108 396.0 267 73.8
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 4.0e-108 395.2 270 72.2
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 8.9e-108 394.0 248 77.0
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 1.3e-106 390.2 244 76.2
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 2.9e-106 389.0 267 70.4
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.9e-105 386.3 263 70.3
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 2.4e-105 386.0 248 77.0
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 2.4e-105 386.0 267 70.0
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 4.2e-105 385.2 265 72.5
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 1.2e-104 383.6 269 71.0
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 2.1e-104 382.9 267 70.0
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 1.0e-103 380.6 275 68.7
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 1.3e-103 380.2 247 74.9
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 3.9e-103 378.6 269 69.5
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 3.9e-103 378.6 254 72.0
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.9e-102 376.3 247 74.5
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 3.3e-102 375.6 271 68.3
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 7.3e-102 374.4 248 75.8
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 7.3e-102 374.4 269 69.5
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 2.1e-101 372.9 264 68.2
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 1.8e-100 369.8 241 74.3
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 2.4e-100 369.4 247 72.9
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 3.1e-100 369.0 243 71.2
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 5.3e-100 368.2 248 71.8
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 6.9e-100 367.9 269 68.0
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 1.2e-99 367.1 235 75.3
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 1.5e-99 366.7 247 73.7
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 2.0e-99 366.3 244 70.5
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.0e-99 366.3 240 75.8
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 2.0e-99 366.3 234 76.1
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 4.5e-99 365.2 277 65.0
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 7.6e-99 364.4 247 71.3
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 1.7e-98 363.2 269 65.8
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 2.9e-98 362.5 249 71.5
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 2.9e-98 362.5 246 72.0
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 4.9e-98 361.7 248 71.0
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 6.4e-98 361.3 247 70.9
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 8.4e-98 360.9 247 70.4
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 1.4e-97 360.1 247 68.0
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 2.4e-97 359.4 247 67.6
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 2.4e-97 359.4 248 71.0
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 2.4e-97 359.4 247 71.3
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 7.1e-97 357.8 248 69.0
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 9.3e-97 357.5 245 71.8
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 1.2e-96 357.1 244 70.9
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 6.0e-96 354.8 248 69.4
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 6.0e-96 354.8 245 71.4
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 7.9e-96 354.4 272 64.3
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 1.8e-95 353.2 252 68.3
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 5.1e-95 351.7 245 73.1
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 8.7e-95 350.9 245 69.8
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.5e-94 350.1 269 65.4
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 1.5e-94 350.1 239 69.0
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 3.3e-94 349.0 239 68.2
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 2.1e-93 346.3 246 67.9
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.6e-93 345.5 247 68.4
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 4.8e-93 345.1 247 68.4
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 6.2e-93 344.7 240 67.5
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 6.2e-93 344.7 240 67.5
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 1.1e-92 344.0 269 65.1
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.1e-92 344.0 247 66.8
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 1.4e-92 343.6 248 66.1
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 3.1e-92 342.4 248 64.9
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 5.3e-92 341.7 247 68.0
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 6.9e-92 341.3 240 67.1
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 6.9e-92 341.3 240 67.1
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 2.0e-91 339.7 247 65.2
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 4.5e-91 338.6 248 67.3
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 4.5e-91 338.6 247 68.0
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 9.9e-91 337.4 247 64.8
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.7e-90 336.7 265 63.4
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 1.7e-90 336.7 245 65.7
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 3.8e-90 335.5 246 65.0
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 3.8e-90 335.5 245 68.2
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.4e-90 334.7 240 67.1
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 1.1e-89 334.0 266 65.0
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 1.4e-89 333.6 239 66.5
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 5.5e-89 331.6 240 65.4
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 9.3e-89 330.9 262 64.5
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 1.2e-88 330.5 239 66.1
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 1.6e-88 330.1 240 67.9
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 2.7e-88 329.3 245 66.9
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 3.5e-88 328.9 236 65.7
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 3.5e-88 328.9 240 67.5
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.0e-87 327.4 236 65.7
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 3.9e-87 325.5 239 65.7
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 1.1e-86 323.9 239 64.0
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 2.5e-86 322.8 271 61.3
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 3.7e-85 318.9 250 64.8
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.8e-84 316.6 224 70.5
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 1.8e-84 316.6 248 60.5
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 1.2e-80 303.9 252 60.3
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.6e-75 286.2 237 59.9
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 2.6e-75 286.2 225 60.4
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 4.5e-75 285.4 272 52.6
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 6.1e-72 275.0 219 61.6
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 1.0e-71 274.2 274 50.0
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 3.9e-71 272.3 173 76.3
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 1.5e-70 270.4 247 55.5
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.7e-70 268.5 173 76.3
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 7.4e-70 268.1 237 58.2
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.6e-69 266.9 237 58.6
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.1e-68 264.2 173 74.6
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 1.7e-66 256.9 173 74.6
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 6.1e-64 248.4 177 68.4
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 1.8e-63 246.9 236 53.4
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 3.9e-63 245.7 208 55.8
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 6.5e-58 228.4 173 64.2
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 3.6e-56 222.6 245 46.1
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.1e-54 217.6 151 70.9
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 3.1e-52 209.5 119 80.7
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 4.5e-51 205.7 236 46.2
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.2e-50 203.4 157 65.6
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 1.0e-47 194.5 218 45.4
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 4.0e-47 192.6 129 74.4
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 6.3e-45 185.3 129 72.9
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.3e-42 177.6 129 67.4
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 8.5e-42 174.9 129 67.4
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 1.1e-41 174.5 171 50.9
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 6.8e-39 165.2 109 71.6
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 5.0e-34 149.1 150 49.3
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 2.0e-30 137.1 79 78.5
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 3.7e-29 132.9 92 71.7
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.7e-26 124.0 128 50.8
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 2.3e-26 123.6 107 56.1
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.8e-24 116.7 247 34.0
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 6.1e-24 115.5 96 59.4
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 6.8e-23 112.1 93 62.4
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 6.8e-23 112.1 93 62.4
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 1.5e-22 110.9 97 51.5
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 9.2e-20 101.7 75 61.3
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 1.4e-12 77.8 248 26.2
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 3.6e-08 63.2 83 45.8
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.0e-07 59.7 83 44.6
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.0e-07 59.7 83 44.6


User provided reference genes

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