Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.3e-96 356.3 165 100.0
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 8.3e-72 273.9 167 74.9
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.2e-70 270.0 167 74.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.2e-70 270.0 167 74.3
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.5e-70 268.1 167 72.5
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 5.9e-70 267.7 164 74.4
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 71.3
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 2.9e-69 265.4 167 70.7
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.9e-69 265.4 167 73.1
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.0e-69 264.6 167 73.1
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 6.6e-69 264.2 167 71.9
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.1e-68 263.5 167 69.5
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.5e-68 263.1 164 72.6
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 68.9
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.3e-68 261.9 167 69.5
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 69.5
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 4.3e-68 261.5 165 70.9
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 70.7
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 9.5e-68 260.4 167 71.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 9.5e-68 260.4 167 70.7
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 68.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 8.0e-67 257.3 167 68.9
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 69.5
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 69.5
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 69.5
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 67.7
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.8e-66 256.1 167 68.9
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.8e-66 256.1 166 68.7
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.8e-66 256.1 172 68.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.3e-66 255.8 167 69.5
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.3e-66 255.8 167 68.9
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 3.0e-66 255.4 167 68.3
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 4.0e-66 255.0 167 68.9
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 6.8e-66 254.2 167 68.3
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.2e-65 253.4 167 67.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.5e-65 253.1 167 67.7
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.5e-65 253.1 167 67.7
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 4.4e-65 251.5 167 69.5
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.7e-65 251.1 167 67.1
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 7.5e-65 250.8 166 66.9
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 9.8e-65 250.4 167 67.1
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 67.1
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 65.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.7e-64 248.4 167 65.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.4e-64 247.7 167 68.3
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 8.3e-64 247.3 167 65.9
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 8.3e-64 247.3 167 65.9
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 8.3e-64 247.3 168 66.7
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.4e-63 246.5 167 64.1
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 4.1e-63 245.0 165 67.3
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 5.4e-63 244.6 165 67.3
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 5.4e-63 244.6 167 63.5
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 9.2e-63 243.8 167 66.5
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 9.2e-63 243.8 167 66.5
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.0e-62 242.7 164 66.5
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 5.9e-62 241.1 164 66.5
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 7.8e-62 240.7 167 64.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.0e-61 240.4 167 64.7
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.3e-61 240.0 167 64.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.3e-61 240.0 164 67.1
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.3e-61 239.2 166 65.1
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 3.9e-61 238.4 168 66.7
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 3.9e-61 238.4 168 66.7
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 6.6e-61 237.7 166 62.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 8.6e-61 237.3 167 63.5
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 8.6e-61 237.3 167 63.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 1.1e-60 236.9 168 66.1
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 66.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 66.1
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.5e-60 235.7 168 66.1
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.5e-60 235.7 168 66.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.5e-60 235.7 167 62.9
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 66.1
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 66.1
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 4.3e-60 235.0 168 65.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 4.3e-60 235.0 164 63.4
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 4.3e-60 235.0 166 65.7
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 5.6e-60 234.6 167 62.3
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.2e-59 233.4 168 65.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.6e-59 233.0 166 64.5
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.8e-59 232.3 166 63.9
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.7e-59 231.5 189 58.7
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 4.7e-59 231.5 166 63.9
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 6.2e-59 231.1 168 63.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 6.2e-59 231.1 168 64.9
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 8.9e-58 227.3 178 62.4
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 8.9e-58 227.3 167 61.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-57 226.9 159 62.9
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.2e-57 226.9 168 63.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.2e-57 226.9 167 59.9
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.5e-57 226.5 167 61.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.4e-57 225.3 168 64.3
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 9.8e-57 223.8 167 59.3
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 9.8e-57 223.8 164 61.6
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 9.8e-57 223.8 167 60.5
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.7e-56 223.0 179 59.8
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 4.1e-55 218.4 167 59.9
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 6.0e-54 214.5 166 58.4
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.0e-53 213.8 189 54.5
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.3e-53 213.4 203 50.2
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 9.5e-52 207.2 219 46.1
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.8e-51 205.7 137 66.4
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 3.6e-51 205.3 165 57.6
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 6.2e-51 204.5 189 50.8
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.5e-49 199.9 166 56.0
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.2e-48 196.1 126 69.0
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 8.3e-48 194.1 164 56.1
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.9e-47 193.0 163 51.5
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.4e-47 192.6 131 67.2
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.6e-46 189.9 176 51.1
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.8e-46 187.6 175 53.1
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.9e-44 183.0 134 64.2
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.9e-44 183.0 165 52.7
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 2.5e-44 182.6 164 48.8
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-43 179.5 127 63.0
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.1e-42 177.2 162 53.1
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 3.4e-41 172.2 165 50.3
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 7.6e-41 171.0 122 62.3
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.3e-40 170.2 167 44.9
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.7e-40 169.9 167 49.1
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.8e-40 168.7 117 63.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 9.2e-39 164.1 178 45.5
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.9e-36 156.4 167 47.3
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.9e-36 156.4 166 45.8
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-35 153.7 133 53.4
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 8.1e-35 151.0 97 64.9
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 8.1e-35 151.0 97 64.9
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.4e-34 150.2 148 51.4
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.1e-34 149.1 137 51.1
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 6.9e-34 147.9 117 57.3
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.2e-33 147.1 98 64.3
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.8e-33 144.8 164 45.1
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 9.9e-33 144.1 130 55.4
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 4.9e-32 141.7 163 43.6
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.3e-27 127.1 97 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 3.6e-27 125.6 127 43.3
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 4.5e-25 118.6 101 56.4
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 8.4e-24 114.4 166 38.0
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 5.4e-23 111.7 183 39.9
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 7.1e-23 111.3 164 37.8
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-22 110.5 125 38.4
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 5.1e-21 105.1 99 55.6
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 8.7e-21 104.4 79 55.7
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.5e-20 103.6 114 44.7
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.8e-19 99.4 107 43.9
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.9e-12 76.6 167 29.9
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-10 70.5 64 54.7
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-10 70.5 64 54.7
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-10 69.7 57 57.9
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-10 69.7 65 55.4
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.5e-09 65.5 57 56.1
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 7.6e-09 64.7 47 68.1
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 7.6e-09 64.7 61 42.6
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.3e-08 63.9 115 28.7
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-08 63.5 64 51.6
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.7e-08 63.5 41 61.0
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 2.2e-08 63.2 39 76.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.8e-08 62.4 64 50.0
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 6.5e-08 61.6 132 30.3
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 8.4e-08 61.2 165 28.5
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 7.1e-07 58.2 127 29.1
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 9.3e-07 57.8 44 59.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.1e-06 56.6 67 38.8


User provided reference genes

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