Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 4069.2 2058 100.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2550.4 1943 67.3
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2483.8 2030 64.9
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2446.8 1902 66.2
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2426.0 1968 64.3
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2397.9 2014 63.5
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2391.3 1980 64.1
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2374.4 2038 62.5
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2365.1 2015 62.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2346.2 1913 63.4
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2337.0 1955 62.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2328.9 2080 60.5
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2314.7 1961 62.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2291.9 1957 62.1
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2290.4 2023 60.1
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2288.5 1935 62.6
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2275.7 2003 60.1
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2273.4 1996 60.7
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2266.9 1911 62.5
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2254.9 1997 60.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2243.8 1988 60.4
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2229.9 1987 59.7
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2228.8 1964 60.4
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2223.7 1979 60.5
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2214.9 2021 58.7
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2208.7 1992 59.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2207.6 2002 58.9
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2206.4 1932 60.9
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2204.1 2024 59.7
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2194.5 1979 60.4
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2189.8 1941 60.7
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2188.7 1928 60.6
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2147.5 1954 59.1
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2144.8 1989 58.5
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2144.0 1937 59.2
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2137.5 1961 57.8
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2135.1 1959 57.7
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2129.8 1960 57.8
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2129.8 1962 58.7
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2124.7 1984 57.5
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2124.4 1978 58.2
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2121.3 1978 58.2
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2117.0 1945 57.7
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2113.6 1974 56.9
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2112.0 2044 56.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2100.5 1993 57.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2097.8 2011 57.2
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2097.0 1920 59.4
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2093.5 1944 57.5
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2092.4 1942 56.9
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2089.7 1978 57.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2085.8 1996 57.3
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2072.0 2025 55.5
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2059.6 2024 55.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2052.7 2002 55.6
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2047.3 2123 53.4
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2045.8 2057 55.0
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2045.0 2085 55.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2044.6 1975 56.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2041.9 1955 56.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2033.5 2012 55.6
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2032.7 1942 56.1
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1977.6 1978 55.7
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1973.4 1960 54.8
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1972.2 2077 53.2
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1968.4 1793 59.1
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1964.5 1980 55.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1945.6 1895 55.3
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1934.8 1896 55.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1929.8 1902 55.3
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1929.5 1901 55.0
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1927.5 1896 54.9
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1925.6 1883 55.9
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1921.0 1907 55.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1912.5 1914 54.5
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1904.8 1910 54.5
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1898.2 1931 55.4
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1895.9 1933 54.0
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1878.6 1895 54.0
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1878.2 1932 53.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1864.7 1919 53.4
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1822.4 1537 63.0
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1802.7 2115 48.9
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1596.6 1939 48.3
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1561.2 1607 53.3
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1533.5 1778 48.8
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1467.6 1185 64.5
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1454.5 1358 58.5
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1204.5 2235 37.0
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1200.7 1944 39.1
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1188.3 2209 36.0
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 7.6e-308 1061.6 2178 34.3
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.8e-304 1050.4 795 68.3
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 9.1e-277 958.4 1389 43.3
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.0e-263 914.1 796 62.7
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 9.5e-242 842.0 801 57.8
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 8.9e-232 808.9 672 62.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.1e-229 802.0 2092 30.6
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.1e-221 775.4 1150 40.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.4e-199 700.7 769 51.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 3.6e-180 637.5 753 49.8
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 3.8e-166 590.9 793 45.8
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 5.7e-162 577.0 481 64.2
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.3e-150 539.3 359 75.2
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.1e-80 304.3 489 41.1
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 9.6e-77 293.9 217 68.2
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.6e-77 293.9 187 75.9
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 4.3e-69 268.5 222 60.8
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 2.7e-63 249.2 308 49.7
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 3.3e-61 242.3 365 40.8
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 6.9e-59 234.6 272 46.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 8.2e-52 211.1 124 81.5
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 9.4e-40 171.0 243 42.8
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.3e-33 150.6 196 42.9
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.2e-30 138.7 127 53.5
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 8.8e-30 137.9 82 81.7
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.0e-25 124.4 145 46.9
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.7e-18 99.8 143 41.3
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 5.9e-18 98.6 126 49.2
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.2e-15 90.9 69 62.3
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.0e-14 87.8 74 60.8
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.0e-14 85.9 61 65.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.1e-11 77.8 69 53.6
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 8.6e-09 68.2 91 46.2
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.2e-07 64.3 66 40.9
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 6.2e-07 62.0 69 50.7
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 1.8e-06 60.5 118 30.5


User provided reference genes

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