Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 0.0e+00 1080.9 539 100.0
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 9.3e-197 690.6 549 67.6
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 8.7e-195 684.1 544 66.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.9e-194 682.9 544 66.5
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.3e-193 680.2 543 67.6
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.2e-190 669.5 543 65.6
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 8.4e-190 667.5 517 67.1
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.4e-189 666.8 545 65.7
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 2.7e-188 662.5 552 64.9
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.5e-186 656.8 543 65.4
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 7.6e-183 644.4 539 64.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.1e-181 640.6 546 63.4
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.5e-181 639.4 558 62.4
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.5e-180 635.6 546 63.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.8e-179 633.3 550 63.3
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.8e-179 633.3 557 62.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 3.7e-177 625.5 544 62.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.4e-176 622.9 546 62.1
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 4.0e-176 622.1 539 61.6
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 4.0e-176 622.1 560 60.5
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.6e-175 619.4 540 62.0
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.9e-174 615.9 548 60.8
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.5e-174 614.8 550 60.0
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.1e-173 614.0 543 60.8
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.5e-173 612.8 544 61.0
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.0e-171 607.4 543 60.2
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.3e-171 607.1 538 59.7
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 2.3e-171 606.3 553 60.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.9e-170 603.2 544 59.7
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.9e-170 603.2 550 59.5
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.3e-169 600.5 558 59.7
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.8e-169 599.4 553 59.1
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.3e-169 598.2 553 60.2
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.1e-168 595.9 550 59.1
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.1e-168 595.5 540 59.4
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.6e-167 592.8 545 58.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.0e-166 590.9 542 59.8
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.7e-166 590.1 559 59.4
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.9e-166 589.3 542 59.6
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 8.5e-166 587.8 601 54.6
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.1e-165 587.4 545 59.1
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.4e-165 587.0 576 57.3
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 4.2e-165 585.5 558 57.3
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 5.5e-165 585.1 544 58.3
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.2e-164 583.9 557 57.6
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 4.6e-164 582.0 548 58.2
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-162 577.4 555 57.1
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.1e-162 577.4 555 57.1
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.5e-162 577.0 553 58.0
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 2.0e-162 576.6 554 56.9
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.0e-162 576.6 546 58.2
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.5e-162 576.2 560 56.6
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 7.4e-162 574.7 560 56.6
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 7.4e-162 574.7 560 56.8
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 9.7e-162 574.3 563 55.8
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.3e-161 573.9 554 56.9
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.8e-161 572.8 535 58.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.3e-160 568.5 535 58.9
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 6.9e-160 568.2 558 56.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.2e-159 567.4 557 55.5
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.2e-159 567.4 559 56.7
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.5e-159 567.0 536 58.6
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.6e-159 566.2 540 57.6
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 5.9e-159 565.1 555 56.4
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 5.9e-159 565.1 558 56.3
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 7.7e-159 564.7 560 55.7
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.3e-158 563.9 564 55.9
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 5.0e-158 562.0 548 56.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.1e-157 560.8 554 55.6
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.5e-157 559.7 561 56.9
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 3.2e-157 559.3 561 54.5
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.2e-157 558.9 606 53.8
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 7.2e-157 558.1 542 57.4
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.2e-156 557.4 546 56.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.1e-156 556.6 548 56.2
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 4.7e-156 555.4 551 56.3
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 6.1e-156 555.1 549 55.9
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.4e-155 553.9 481 64.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.8e-155 553.5 561 55.1
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.1e-154 550.8 555 54.8
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.6e-154 549.7 467 59.7
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 3.3e-154 549.3 553 54.8
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 3.7e-153 545.8 553 54.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 4.8e-153 545.4 536 56.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 4.8e-153 545.4 556 55.6
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.4e-152 543.9 553 55.0
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.1e-152 542.7 572 53.8
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.1e-152 542.7 547 55.0
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.3e-150 537.3 544 54.0
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-150 536.6 572 53.8
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.8e-150 535.8 540 57.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 5.5e-149 531.9 549 54.8
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.2e-149 531.6 538 53.0
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 4.7e-148 528.9 498 60.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.0e-147 527.7 502 55.0
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-144 517.7 549 54.1
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 4.1e-144 515.8 542 53.5
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 3.8e-142 509.2 487 54.8
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 3.2e-141 506.1 550 52.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 5.5e-141 505.4 518 55.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.2e-140 504.2 466 57.1
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 4.0e-139 499.2 551 52.5
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.2e-138 497.7 637 48.7
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.7e-137 493.8 526 53.8
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 3.7e-137 492.7 556 51.8
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 8.3e-137 491.5 561 48.8
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 3.1e-136 489.6 495 55.4
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 4.5e-135 485.7 516 52.5
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 7.7e-135 485.0 554 48.9
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 7.2e-133 478.4 577 47.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.2e-130 471.1 473 52.0
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.2e-129 466.8 534 48.1
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.9e-125 453.8 484 50.4
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.5e-122 441.8 552 47.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.7e-121 440.7 558 47.0
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.3e-121 438.7 456 56.4
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.2e-120 436.4 463 54.9
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 4.1e-120 436.0 448 52.0
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.6e-119 434.1 552 45.7
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.5e-114 415.2 502 50.4
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-112 411.0 577 41.8
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-112 411.0 577 41.8
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-112 411.0 580 42.9
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.9e-110 402.9 529 43.3
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.5e-109 398.3 534 43.3
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 4.3e-101 372.9 501 43.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.7e-97 359.8 554 39.7
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.1e-94 349.4 311 60.8
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 4.7e-92 342.8 325 57.8
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 3.5e-87 326.6 467 45.8
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.6e-84 317.8 359 47.9
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.1e-77 295.0 710 31.3
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.9e-73 280.4 589 33.3
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.9e-73 279.6 609 34.0
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.2e-72 276.6 179 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.1e-68 264.2 463 38.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.8e-68 263.8 401 45.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.1e-67 260.4 164 72.0
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.4e-48 198.4 189 60.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.6e-47 194.9 210 44.3
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 2.5e-45 187.6 157 66.2
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 4.8e-44 183.3 156 65.4
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.1e-37 162.2 169 56.2
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 4.4e-37 160.2 262 41.2
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.2e-36 157.9 153 62.1
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 4.1e-35 153.7 136 60.3
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.3e-35 153.3 282 39.0
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.2e-34 152.1 545 25.5
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.8e-30 136.0 94 69.1
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.3e-29 134.0 148 50.7
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.9e-24 118.2 181 35.4
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.4e-22 112.1 170 35.9
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 9.1e-19 99.4 68 64.7
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.2e-17 94.7 134 44.8
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.9e-17 94.4 102 43.1
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.6e-08 63.5 39 64.1


User provided reference genes

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