Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09810 Coffea canephora HOM05D000286 ORTHO05D022410 1.7e-103 379.4 202 100.0
CSS0034497 Camellia sinensis var. sinensis HOM05D000286 ORTHO05D000170 3.6e-45 185.7 169 60.9
SalBow4G2794 Salvia bowleyana HOM05D000286 ORTHO05D000170 5.2e-44 181.8 173 59.5
Oeu043890.1 Olea europaea HOM05D000286 ORTHO05D000170 9.9e-43 177.6 167 58.1
Oeu023210.1 Olea europaea HOM05D000286 ORTHO05D000170 3.0e-39 166.0 184 52.7
Migut.A00193 Erythranthe guttata HOM05D000286 ORTHO05D000170 2.1e-37 159.8 167 53.3
Actinidia30283 Actinidia chinensis HOM05D000286 ORTHO05D000170 8.1e-37 157.9 170 53.5
Aqoxy7G03884 Aquilegia oxysepala HOM05D000286 ORTHO05D000170 1.5e-35 153.7 180 50.6
Lsat_1_v5_gn_1_45761 Lactuca sativa HOM05D000286 ORTHO05D000170 2.6e-35 152.9 172 55.8
TAR383G0907 Trochodendron aralioides HOM05D000286 ORTHO05D000170 1.7e-34 150.2 167 50.3
Dinv23380 Davidia involucrata HOM05D000286 ORTHO05D000170 4.9e-34 148.7 168 53.6
MBI04_g06588_MAGBIO Magnolia biondii HOM05D000286 ORTHO05D000170 1.1e-33 147.5 170 54.1
Nn6g35305 Nelumbo nucifera HOM05D000286 ORTHO05D000170 1.2e-32 144.1 163 52.1
Actinidia14681 Actinidia chinensis HOM05D000286 ORTHO05D000170 3.0e-31 139.4 166 51.2
HanXRQChr04g0108831 Helianthus annuus HOM05D000286 ORTHO05D000170 3.0e-31 139.4 171 49.7
Ciclev10008638m.g Citrus clementina HOM05D000286 ORTHO05D000170 8.7e-31 137.9 184 45.7
Sc06g0000830 Simmondsia chinensis HOM05D000286 ORTHO05D000170 1.5e-30 137.1 168 50.6
Manes.16G074300 Manihot esculenta HOM05D000286 ORTHO05D000170 1.9e-30 136.7 167 47.3
PGSC0003DMG400004483 Solanum tuberosum HOM05D000286 ORTHO05D000170 4.3e-30 135.6 167 49.7
Cpa.g.sc1834.2 Carica papaya HOM05D000286 ORTHO05D000170 1.6e-29 133.7 168 46.4
MSTRG.25915 Avicennia marina HOM05D000286 ORTHO05D000170 2.1e-29 133.3 169 47.3
HanXRQChr11g0352381 Helianthus annuus HOM05D000286 ORTHO05D000170 6.2e-29 131.7 168 48.2
Nitab4.5_0000239g0040 Nicotiana tabacum HOM05D000286 ORTHO05D000170 8.1e-29 131.3 167 47.3
Gohir.D07G025400 Gossypium hirsutum HOM05D000286 ORTHO05D000170 1.4e-28 130.6 169 51.5
CAN.G20.26 Capsicum annuum HOM05D000286 ORTHO05D000170 2.4e-28 129.8 168 48.2
vmacro05264 Vaccinium macrocarpon HOM05D000286 ORTHO05D000170 4.0e-28 129.0 163 47.9
Nitab4.5_0007887g0030 Nicotiana tabacum HOM05D000286 ORTHO05D000170 5.3e-28 128.6 164 47.6
unitig_748.g7991 Utricularia gibba HOM05D000286 ORTHO05D000170 5.3e-28 128.6 154 51.3
Duzib168G1356 Durio zibethinus HOM05D000286 ORTHO05D000170 6.9e-28 128.3 169 47.9
Gohir.A07G022257 Gossypium hirsutum HOM05D000286 ORTHO05D000170 6.9e-28 128.3 169 50.3
Gorai.001G026500 Gossypium raimondii HOM05D000286 ORTHO05D000170 9.0e-28 127.9 168 50.6
Atru.chr7.2071 Acer truncatum HOM05D000286 ORTHO05D000170 1.2e-27 127.5 168 45.8
Actinidia15741 Actinidia chinensis HOM05D000286 ORTHO05D000170 1.2e-27 127.5 165 47.3
Solyc08g066440.3 Solanum lycopersicum HOM05D000286 ORTHO05D000170 4.5e-27 125.6 166 46.4
Sopen08g020270 Solanum pennellii HOM05D000286 ORTHO05D000170 4.5e-27 125.6 166 46.4
SGA_v2.0_scaffold243G44273 Striga asiatica HOM05D000286 ORTHO05D000170 1.3e-26 124.0 166 47.0
Gohir.A06G092100 Gossypium hirsutum HOM05D000286 ORTHO05D000170 2.2e-26 123.2 165 47.3
Gohir.D06G091600 Gossypium hirsutum HOM05D000286 ORTHO05D000170 2.2e-26 123.2 165 47.3
Gorai.010G105600 Gossypium raimondii HOM05D000286 ORTHO05D000170 2.2e-26 123.2 165 47.3
BcaB08g37035 Brassica carinata HOM05D000286 ORTHO05D000170 3.8e-26 122.5 169 45.6
Gorai.009G048900 Gossypium raimondii HOM05D000286 ORTHO05D000170 6.4e-26 121.7 178 45.5
CiPaw.07G203000 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.4e-25 120.6 162 48.1
DCAR_007720 Daucus carota HOM05D000286 ORTHO05D000170 1.4e-25 120.6 167 44.9
Dinv09232 Davidia involucrata HOM05D000286 ORTHO05D022410 3.2e-25 119.4 150 48.0
Potri.018G045800 Populus trichocarpa HOM05D000286 ORTHO05D000170 3.2e-25 119.4 164 45.1
arahy.Tifrunner.gnm1.ann1.PEW7PV Arachis hypogaea HOM05D000286 ORTHO05D000170 4.2e-25 119.0 168 44.6
arahy.Tifrunner.gnm1.ann1.WQGS78 Arachis hypogaea HOM05D000286 ORTHO05D000170 4.2e-25 119.0 172 44.8
Gohir.D05G047600 Gossypium hirsutum HOM05D000286 ORTHO05D000170 4.2e-25 119.0 177 45.2
Aa31LG3G15540 Aethionema arabicum HOM05D000286 ORTHO05D000170 5.4e-25 118.6 169 46.7
Rhsim07G0146500 Rhododendron simsii HOM05D000286 ORTHO05D000170 7.1e-25 118.2 166 45.2
Hund19500 Selenicereus undatus HOM05D000286 ORTHO05D000170 7.1e-25 118.2 158 45.6
Lalb_Chr11g0064551 Lupinus albus HOM05D000286 ORTHO05D000170 1.2e-24 117.5 163 44.8
Gohir.A05G045900 Gossypium hirsutum HOM05D000286 ORTHO05D000170 1.6e-24 117.1 172 45.9
Medtr3g109870 Medicago truncatula HOM05D000286 ORTHO05D000170 2.1e-24 116.7 163 44.8
Sp6g31970 Schrenkiella parvula HOM05D000286 ORTHO05D000170 2.7e-24 116.3 166 43.4
Lalb_Chr23g0269671 Lupinus albus HOM05D000286 ORTHO05D000170 6.0e-24 115.2 162 43.2
Ca_15582_v3 Cicer arietinum L. HOM05D000286 ORTHO05D000170 1.0e-23 114.4 164 45.1
ECA248G2263 Erigeron canadensis HOM05D000286 ORTHO05D000170 1.3e-23 114.0 168 41.1
Glyma.04G085500 Glycine max HOM05D000286 ORTHO05D000170 1.8e-23 113.6 164 43.9
Carub.0006s1013 Capsella rubella HOM05D000286 ORTHO05D000170 3.0e-23 112.8 168 42.9
Lj1g0027500 Lotus japonicus HOM05D000286 ORTHO05D000170 3.0e-23 112.8 167 43.1
Eucgr.C00607 Eucalyptus grandis HOM05D000286 ORTHO05D000170 5.1e-23 112.1 166 43.4
AUR62041972 Chenopodium quinoa HOM05D000286 ORTHO05D000170 6.7e-23 111.7 168 44.0
Peaxi162Scf00654g00610 Petunia axillaris HOM05D000286 ORTHO05D000170 6.7e-23 111.7 158 46.2
TPR.G15102 Trifolium pratense HOM05D000286 ORTHO05D000170 6.7e-23 111.7 159 43.4
FAN15G0888 Fragaria x ananassa HOM05D000286 ORTHO05D000170 8.7e-23 111.3 167 43.1
Lalb_Chr08g0242981 Lupinus albus HOM05D000286 ORTHO05D000170 8.7e-23 111.3 169 42.0
COL.COLO4_20986 Corchorus olitorius HOM05D000286 ORTHO05D000170 1.1e-22 110.9 166 44.0
Sabra06G0185300 Salix brachista HOM05D000286 ORTHO05D000170 1.5e-22 110.5 165 44.8
A10p26100 Brassica napus HOM05D000286 ORTHO05D000170 4.3e-22 109.0 168 41.7
MD08G1112500 Malus domestica HOM05D000286 ORTHO05D000170 5.6e-22 108.6 171 44.4
Psat5g021360 Pisum sativum HOM05D000286 ORTHO05D000170 5.6e-22 108.6 163 43.6
RcHm_v2.0_Chr6g0306501 Rosa chinensis HOM05D000286 ORTHO05D000170 5.6e-22 108.6 168 41.1
Lj8C571G1 Lonicera japonica HOM05D000286 ORTHO05D000170 7.4e-22 108.2 97 60.8
AL6G22360 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 2.1e-21 106.7 163 43.6
AT5G11650 Arabidopsis thaliana HOM05D000286 ORTHO05D000170 2.1e-21 106.7 166 42.2
Thhalv10013735m.g Eutrema salsugineum HOM05D000286 ORTHO05D000170 2.1e-21 106.7 166 41.6
CANSAT25G3686 Cannabis sativa HOM05D000286 ORTHO05D000170 3.7e-21 105.9 168 42.9
MD15G1091700 Malus domestica HOM05D000286 ORTHO05D000170 3.7e-21 105.9 171 42.1
THA.LOC104799189 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 3.7e-21 105.9 169 42.6
PSO210G1130 Papaver somniferum HOM05D000286 ORTHO05D000170 6.2e-21 105.1 167 41.9
PSO210G5432 Papaver somniferum HOM05D000286 ORTHO05D000170 6.2e-21 105.1 167 42.5
Ah.10g034910 Amaranthus hybridus HOM05D000286 ORTHO05D000170 1.4e-20 104.0 185 38.4
Phvul.009G110900 Phaseolus vulgaris HOM05D000286 ORTHO05D000170 3.1e-20 102.8 164 40.9
BolC9t59346H Brassica oleracea HOM05D000286 ORTHO05D000170 9.0e-20 101.3 168 39.9
Dinv27914 Davidia involucrata HOM05D000286 ORTHO05D022410 9.0e-20 101.3 98 59.2
SEGI_14199 Sequoiadendron giganteum HOM05D000286 ORTHO05D000170 9.0e-20 101.3 179 38.5
C09p65170 Brassica napus HOM05D000286 ORTHO05D000170 4.5e-19 99.0 168 39.3
Duzib187G1408 Durio zibethinus HOM05D000286 ORTHO05D000170 5.8e-19 98.6 170 40.0
FAN20G1007 Fragaria x ananassa HOM05D000286 ORTHO05D000170 5.8e-19 98.6 167 40.7
FvH4_2g35400 Fragaria vesca HOM05D000286 ORTHO05D000170 7.6e-19 98.2 167 40.1
Duzib150G0730 Durio zibethinus HOM05D000286 ORTHO05D000170 1.3e-18 97.4 167 42.5
Sed0014232 Sechium edule HOM05D000286 ORTHO05D000170 1.7e-18 97.1 167 39.5
Thecc.09G046700 Theobroma cacao HOM05D000286 ORTHO05D000170 1.7e-18 97.1 167 40.7
Cfa013378 Carpinus fangiana HOM05D000286 ORTHO05D000170 2.9e-18 96.3 167 40.1
BcaC04g19207 Brassica carinata HOM05D000286 ORTHO05D000170 3.8e-18 95.9 166 37.3
BraA10t44671Z Brassica rapa HOM05D000286 ORTHO05D000170 3.8e-18 95.9 166 37.3
Hund03387 Selenicereus undatus HOM05D000286 ORTHO05D000170 3.8e-18 95.9 161 43.5
Zm00001eb120470 Zea mays HOM05D000286 ORTHO05D000170 6.5e-18 95.1 181 37.6
PGR031G0935 Punica granatum HOM05D000286 ORTHO05D000170 1.9e-17 93.6 163 38.0
VMungo1309G1083 Vigna mungo HOM05D000286 ORTHO05D000170 1.9e-17 93.6 163 39.3
Dinv15234 Davidia involucrata HOM05D000286 ORTHO05D022410 3.2e-17 92.8 112 53.6
Glyma.06G087100 Glycine max HOM05D000286 ORTHO05D000170 3.2e-17 92.8 159 39.6
Haze_21903 Corylus avellana HOM05D000286 ORTHO05D000170 7.1e-17 91.7 167 38.9
ClCG08G012150 Citrullus lanatus HOM05D000286 ORTHO05D000170 1.6e-16 90.5 169 40.2
Sabra18G0044800 Salix brachista HOM05D000286 ORTHO05D000170 1.6e-16 90.5 159 40.9
TWI63G0846 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 1.6e-16 90.5 167 39.5
Dinv16827 Davidia involucrata HOM05D000286 ORTHO05D022410 4.6e-16 89.0 152 42.8
Os01g0199400 Oryza sativa ssp. japonica HOM05D000286 ORTHO05D000170 4.6e-16 89.0 179 34.6
FAN27G1438 Fragaria x ananassa HOM05D000286 ORTHO05D000170 6.7e-15 85.1 167 36.5
Dinv06047 Davidia involucrata HOM05D000286 ORTHO05D022410 1.1e-14 84.3 116 47.4
CDE05G2046 Ceratophyllum demersum HOM05D000286 ORTHO05D000170 1.9e-14 83.6 154 36.4
Potri.006G237200 Populus trichocarpa HOM05D000286 ORTHO05D000170 1.9e-14 83.6 165 36.4
EL10Ac2g03992 Beta vulgaris HOM05D000286 ORTHO05D000170 7.4e-14 81.6 170 37.6
CSS0010141 Camellia sinensis var. sinensis HOM05D000286 ORTHO05D000170 1.6e-13 80.5 47 76.6
SHI18692 Sapria himalayana HOM05D000286 ORTHO05D000170 3.7e-13 79.3 166 35.5
CsaV3_2G030770 Cucumis sativus L. HOM05D000286 ORTHO05D000170 6.2e-13 78.6 167 36.5
GSVIVG01035608001 Vitis vinifera HOM05D000286 ORTHO05D000170 5.3e-12 75.5 47 72.3
ATR0705G042 Amborella trichopoda HOM05D000286 ORTHO05D000170 5.8e-11 72.0 161 36.6
Prupe.1G446700 Prunus persica HOM05D000286 ORTHO05D000170 5.8e-11 72.0 169 34.9
QL12p041162 Quercus lobata HOM05D000286 ORTHO05D000170 7.6e-11 71.6 161 34.8
Actinidia34671 Actinidia chinensis HOM05D000286 ORTHO05D000170 2.2e-10 70.1 161 31.1
Hund19518 Selenicereus undatus HOM05D044026 ORTHO05D000170 3.8e-10 69.3 154 31.8
AL5G16390 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 1.1e-09 67.8 43 74.4
Duzib084G0859 Durio zibethinus HOM05D000286 ORTHO05D000170 2.5e-09 66.6 171 33.3
AL1G31590 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 3.2e-09 66.2 41 75.6
AL8G14870 Arabidopsis lyrata HOM05D000286 ORTHO05D000170 7.1e-09 65.1 43 72.1
BcaB06g26023 Brassica carinata HOM05D000286 ORTHO05D000170 1.6e-08 63.9 38 78.9
Migut.D01208 Erythranthe guttata HOM05D000286 ORTHO05D000170 3.5e-08 62.8 160 31.9
HPP92_004017 Vanilla planifolia HOM05D000286 ORTHO05D000170 1.8e-07 60.5 45 57.8
CiPaw.16G098100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.3e-07 60.1 178 31.5
RcHm_v2.0_Chr7g0177791 Rosa chinensis HOM05D000286 ORTHO05D000170 3.0e-07 59.7 174 30.5
Gohir.A11G002100 Gossypium hirsutum HOM05D000286 ORTHO05D000170 6.7e-07 58.5 172 31.4
Eucgr.K02288 Eucalyptus grandis HOM05D000286 ORTHO05D000170 1.5e-06 57.4 168 31.5
Potri.015G031900 Populus trichocarpa HOM05D000286 ORTHO05D000170 1.5e-06 57.4 177 27.7
TWI15G0828 Tripterygium wilfordii HOM05D000286 ORTHO05D000170 1.5e-06 57.4 173 31.2
COL.COLO4_24467 Corchorus olitorius HOM05D000286 ORTHO05D000170 2.5e-06 56.6 180 28.9
MELO3C011132.2 Cucumis melo HOM05D000286 ORTHO05D000170 2.5e-06 56.6 154 32.5
Manes.06G002000 Manihot esculenta HOM05D000286 ORTHO05D000170 2.5e-06 56.6 181 28.7
Nitab4.5_0000430g0040 Nicotiana tabacum HOM05D000286 ORTHO05D000170 2.5e-06 56.6 163 30.1
Nitab4.5_0003309g0050 Nicotiana tabacum HOM05D000286 ORTHO05D000170 2.5e-06 56.6 177 31.6
PGSC0003DMG400033687 Solanum tuberosum HOM05D000286 ORTHO05D000170 2.5e-06 56.6 167 28.7
Gohir.D11G001700 Gossypium hirsutum HOM05D000286 ORTHO05D000170 3.3e-06 56.2 171 28.7
Gorai.007G002700 Gossypium raimondii HOM05D000286 ORTHO05D000170 3.3e-06 56.2 171 28.7
A07p39400 Brassica napus HOM05D000286 ORTHO05D000170 4.3e-06 55.8 180 30.6
BraA07t31489Z Brassica rapa HOM05D000286 ORTHO05D000170 4.3e-06 55.8 180 30.6
BolC6t39801H Brassica oleracea HOM05D000286 ORTHO05D000170 5.7e-06 55.5 180 30.6
THA.LOC104813929 Tarenaya hassleriana HOM05D000286 ORTHO05D000170 5.7e-06 55.5 182 28.0
FAN08G3103 Fragaria x ananassa HOM05D000286 ORTHO05D000170 7.4e-06 55.1 189 29.1
FAN13G1386 Fragaria x ananassa HOM05D000286 ORTHO05D000170 7.4e-06 55.1 189 29.1
Lj9A415T55 Lonicera japonica HOM05D000286 ORTHO05D000170 7.4e-06 55.1 160 30.0
PSO478G4361 Papaver somniferum HOM05D000286 ORTHO05D000170 7.4e-06 55.1 175 29.1
SalBow5G2446 Salvia bowleyana HOM05D000286 ORTHO05D000170 7.4e-06 55.1 180 30.6
AUR62009242 Chenopodium quinoa HOM05D000286 ORTHO05D000170 9.7e-06 54.7 59 50.8
Gohir.A09G173500 Gossypium hirsutum HOM05D000286 ORTHO05D000170 9.7e-06 54.7 199 27.1
MD06G1233800 Malus domestica HOM05D000286 ORTHO05D000170 9.7e-06 54.7 189 29.6
Solyc03g098020.4 Solanum lycopersicum HOM05D000286 ORTHO05D000170 9.7e-06 54.7 163 26.4


User provided reference genes

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