Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09530 Coffea canephora HOM05D005027 ORTHO05D005978 3.0e-59 231.5 105 100.0
Cc08_g09540 Coffea canephora HOM05D005027 ORTHO05D005978 4.1e-48 194.5 96 92.7
Peaxi162Scf00227g00714 Petunia axillaris HOM05D005027 ORTHO05D005978 2.2e-46 188.7 92 91.3
Nitab4.5_0001894g0040 Nicotiana tabacum HOM05D005027 ORTHO05D005978 1.1e-45 186.4 92 90.2
Potri.018G044100 Populus trichocarpa HOM05D005027 ORTHO05D005978 1.9e-45 185.7 96 86.5
Nitab4.5_0003794g0080 Nicotiana tabacum HOM05D005027 ORTHO05D005978 2.5e-45 185.3 92 90.2
PGSC0003DMG400002234 Solanum tuberosum HOM05D005027 ORTHO05D005978 2.5e-45 185.3 90 90.0
Solyc08g066650.3 Solanum lycopersicum HOM05D005027 ORTHO05D005978 4.2e-45 184.5 90 90.0
Sopen08g020520 Solanum pennellii HOM05D005027 ORTHO05D005978 4.2e-45 184.5 90 90.0
Atru.chr7.2090 Acer truncatum HOM05D005027 ORTHO05D005978 7.2e-45 183.7 96 86.5
CSS0030796 Camellia sinensis var. sinensis HOM05D005027 ORTHO05D005978 7.2e-45 183.7 96 87.5
Oeu038805.1 Olea europaea HOM05D005027 ORTHO05D005978 7.2e-45 183.7 90 90.0
Sabra06G0186600 Salix brachista HOM05D005027 ORTHO05D005978 7.2e-45 183.7 96 85.4
FvH4_2g35610 Fragaria vesca HOM05D005027 ORTHO05D005978 9.4e-45 183.3 92 90.2
FAN15G3195 Fragaria x ananassa HOM05D005027 ORTHO05D005978 9.4e-45 183.3 92 90.2
FAN20G3026 Fragaria x ananassa HOM05D005027 ORTHO05D005978 9.4e-45 183.3 92 90.2
FAN27G2638 Fragaria x ananassa HOM05D005027 ORTHO05D005978 9.4e-45 183.3 92 90.2
Manes.16G075700 Manihot esculenta HOM05D005027 ORTHO05D005978 9.4e-45 183.3 96 86.5
Potri.006G238500 Populus trichocarpa HOM05D005027 ORTHO05D005978 1.2e-44 183.0 96 85.4
Eucgr.C02930 Eucalyptus grandis HOM05D005027 ORTHO05D005978 1.6e-44 182.6 96 85.4
MD08G1113800 Malus domestica HOM05D005027 ORTHO05D005978 1.6e-44 182.6 96 85.4
DCAR_004470 Daucus carota HOM05D005027 ORTHO05D005978 2.1e-44 182.2 95 85.3
RcHm_v2.0_Chr6g0306201 Rosa chinensis HOM05D005027 ORTHO05D005978 2.1e-44 182.2 96 85.4
MBI04_g45212_MAGBIO Magnolia biondii HOM05D005027 ORTHO05D005978 2.7e-44 181.8 96 85.4
TAR624G0014 Trochodendron aralioides HOM05D005027 ORTHO05D005978 2.7e-44 181.8 96 85.4
ECA233G5490 Erigeron canadensis HOM05D005027 ORTHO05D005978 3.6e-44 181.4 96 84.4
Oeu030720.1 Olea europaea HOM05D005027 ORTHO05D005978 3.6e-44 181.4 94 84.0
MD15G1093500 Malus domestica HOM05D005027 ORTHO05D005978 4.6e-44 181.0 96 86.5
GSVIVG01035626001 Vitis vinifera HOM05D005027 ORTHO05D005978 4.6e-44 181.0 96 84.4
HanXRQChr02g0050571 Helianthus annuus HOM05D005027 ORTHO05D005978 1.0e-43 179.9 96 84.4
Migut.A00205 Erythranthe guttata HOM05D005027 ORTHO05D005978 1.8e-43 179.1 94 84.0
Lj8A581T28 Lonicera japonica HOM05D005027 ORTHO05D005978 2.3e-43 178.7 92 87.0
Prupe.1G448400 Prunus persica HOM05D005027 ORTHO05D005978 2.3e-43 178.7 96 83.3
Lsat_1_v5_gn_6_23181 Lactuca sativa HOM05D005027 ORTHO05D005978 5.1e-43 177.6 96 82.3
Sed0014536 Sechium edule HOM05D005027 ORTHO05D005978 5.1e-43 177.6 92 83.7
Aqoxy7G01485 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 6.7e-43 177.2 96 82.3
Rhsim02G0178400 Rhododendron simsii HOM05D005027 ORTHO05D005978 6.7e-43 177.2 90 86.7
COL.COLO4_20969 Corchorus olitorius HOM05D005027 ORTHO05D005978 8.8e-43 176.8 96 81.2
Eucgr.C02932 Eucalyptus grandis HOM05D005027 ORTHO05D005978 8.8e-43 176.8 96 80.2
Medtr3g109610 Medicago truncatula HOM05D005027 ORTHO05D005978 8.8e-43 176.8 96 82.3
Phvul.009G109700 Phaseolus vulgaris HOM05D005027 ORTHO05D005978 1.1e-42 176.4 92 84.8
Lsat_1_v5_gn_1_46661 Lactuca sativa HOM05D005027 ORTHO05D005978 1.5e-42 176.0 93 83.9
Psat0s1928g0120 Pisum sativum HOM05D005027 ORTHO05D005978 1.5e-42 176.0 96 82.3
QL12p041392 Quercus lobata HOM05D005027 ORTHO05D005978 1.5e-42 176.0 95 80.0
TPR.G15106 Trifolium pratense HOM05D005027 ORTHO05D005978 1.5e-42 176.0 96 82.3
vmacro11059 Vaccinium macrocarpon HOM05D005027 ORTHO05D005978 1.5e-42 176.0 91 84.6
Glyma.04G084100 Glycine max HOM05D005027 ORTHO05D005978 2.5e-42 175.3 96 81.2
Gohir.D06G092400 Gossypium hirsutum HOM05D005027 ORTHO05D005978 2.5e-42 175.3 96 81.2
Gorai.010G106400 Gossypium raimondii HOM05D005027 ORTHO05D005978 2.5e-42 175.3 96 81.2
HanXRQChr00c0025g0571121 Helianthus annuus HOM05D005027 ORTHO05D005978 2.5e-42 175.3 94 80.9
AUR62009284 Chenopodium quinoa HOM05D005027 ORTHO05D005978 3.3e-42 174.9 89 84.3
Ca_15593_v3 Cicer arietinum L. HOM05D005027 ORTHO05D005978 3.3e-42 174.9 96 81.2
Glyma.06G085800 Glycine max HOM05D005027 ORTHO05D005978 3.3e-42 174.9 96 81.2
PSO210G1252 Papaver somniferum HOM05D005027 ORTHO05D005978 3.3e-42 174.9 94 84.0
ClCG08G012240 Citrullus lanatus HOM05D005027 ORTHO05D005978 4.3e-42 174.5 92 82.6
Ciclev10010609m.g Citrus clementina HOM05D005027 ORTHO05D005978 4.3e-42 174.5 92 82.6
MELO3C011142.2 Cucumis melo HOM05D005027 ORTHO05D005978 4.3e-42 174.5 92 83.7
Thecc.09G045100 Theobroma cacao HOM05D005027 ORTHO05D005978 4.3e-42 174.5 96 79.2
VMungo1309G1842 Vigna mungo HOM05D005027 ORTHO05D005978 4.3e-42 174.5 96 81.2
ECA248G1215 Erigeron canadensis HOM05D005027 ORTHO05D005978 7.4e-42 173.7 93 81.7
Gohir.A06G092800 Gossypium hirsutum HOM05D005027 ORTHO05D005978 7.4e-42 173.7 96 80.2
Medtr7g063800 Medicago truncatula HOM05D005027 ORTHO05D005978 7.4e-42 173.7 96 81.2
Haze_21886 Corylus avellana HOM05D005027 ORTHO05D005978 9.7e-42 173.3 96 80.2
CiPaw.08G025700 Carya illinoinensis HOM05D005027 ORTHO05D005978 1.3e-41 172.9 96 81.2
Cfa013364 Carpinus fangiana HOM05D005027 ORTHO05D005978 1.7e-41 172.6 96 80.2
CDE02G4197 Ceratophyllum demersum HOM05D005027 ORTHO05D005978 1.7e-41 172.6 95 81.1
Duzib168G0183 Durio zibethinus HOM05D005027 ORTHO05D005978 1.7e-41 172.6 91 81.3
Nn8g39130 Nelumbo nucifera HOM05D005027 ORTHO05D005978 1.7e-41 172.6 90 83.3
TWI34G1114 Tripterygium wilfordii HOM05D005027 ORTHO05D005978 1.7e-41 172.6 96 81.2
Actinidia13335 Actinidia chinensis HOM05D005027 ORTHO05D005978 2.2e-41 172.2 96 80.2
Lj1g0019414 Lotus japonicus HOM05D005027 ORTHO05D005978 2.2e-41 172.2 92 83.7
CsaV3_2G030870 Cucumis sativus L. HOM05D005027 ORTHO05D005978 2.8e-41 171.8 92 81.5
Gohir.D07G025900 Gossypium hirsutum HOM05D005027 ORTHO05D005978 2.8e-41 171.8 96 79.2
Gorai.001G027000 Gossypium raimondii HOM05D005027 ORTHO05D005978 2.8e-41 171.8 96 79.2
CANSAT25G1983 Cannabis sativa HOM05D005027 ORTHO05D005978 3.7e-41 171.4 93 81.7
Os01g0566500 Oryza sativa ssp. japonica HOM05D005027 ORTHO05D005978 6.3e-41 170.6 89 84.3
Gohir.A07G022500 Gossypium hirsutum HOM05D005027 ORTHO05D005978 8.2e-41 170.2 96 78.1
TWI63G0812 Tripterygium wilfordii HOM05D005027 ORTHO05D005978 8.2e-41 170.2 96 80.2
Aqoxy7G01484 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 1.4e-40 169.5 91 82.4
arahy.Tifrunner.gnm1.ann1.4KPL6Q Arachis hypogaea HOM05D005027 ORTHO05D005978 1.4e-40 169.5 96 77.1
CiPaw.07G204400 Carya illinoinensis HOM05D005027 ORTHO05D005978 1.4e-40 169.5 94 79.8
SEGI_00216 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 1.4e-40 169.5 92 80.4
AUR62039699 Chenopodium quinoa HOM05D005027 ORTHO05D005978 2.4e-40 168.7 89 80.9
AUR62044294 Chenopodium quinoa HOM05D005027 ORTHO05D005978 2.4e-40 168.7 89 80.9
Lalb_Chr08g0243061 Lupinus albus HOM05D005027 ORTHO05D005978 2.4e-40 168.7 96 79.2
Cpa.g.c24654.4 Carica papaya HOM05D005027 ORTHO05D005978 3.1e-40 168.3 96 75.0
CDE08G1231 Ceratophyllum demersum HOM05D005027 ORTHO05D005978 4.1e-40 167.9 91 80.2
SEGI_19583 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 4.1e-40 167.9 90 81.1
PGR044G2243 Punica granatum HOM05D005027 ORTHO05D005978 5.3e-40 167.5 90 81.1
arahy.Tifrunner.gnm1.ann1.MD1Q75 Arachis hypogaea HOM05D005027 ORTHO05D005978 6.9e-40 167.2 96 76.0
ATR0705G159 Amborella trichopoda HOM05D005027 ORTHO05D005978 9.1e-40 166.8 92 80.4
Aqoxy7G01483 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 1.2e-39 166.4 96 75.0
Ciclev10008050m.g Citrus clementina HOM05D005027 ORTHO05D005978 1.2e-39 166.4 92 77.2
Os01g0746400 Oryza sativa ssp. japonica HOM05D005027 ORTHO05D005978 2.0e-39 165.6 91 79.1
Cpa.g.c24654.3 Carica papaya HOM05D005027 ORTHO05D005978 4.5e-39 164.5 96 74.0
HPP92_022983 Vanilla planifolia HOM05D005027 ORTHO05D005978 5.9e-39 164.1 89 78.7
unitig_46.g18188 Utricularia gibba HOM05D005027 ORTHO05D005978 2.2e-38 162.2 89 76.4
Atru.chr3.767 Acer truncatum HOM05D005027 ORTHO05D005978 5.0e-38 161.0 94 75.5
Sc09g0009280 Simmondsia chinensis HOM05D005027 ORTHO05D005978 5.0e-38 161.0 90 76.7
ATR0723G015 Amborella trichopoda HOM05D005027 ORTHO05D005978 1.1e-37 159.8 96 72.9
AT4G32810 Arabidopsis thaliana HOM05D005027 ORTHO05D005978 1.1e-37 159.8 94 70.2
Aa31sc497G20 Aethionema arabicum HOM05D005027 ORTHO05D005978 1.4e-37 159.5 90 74.4
Aqoxy1G03410 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 1.4e-37 159.5 91 73.6
Aqoxy3G01972 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 1.4e-37 159.5 91 73.6
Thhalv10024788m.g Eutrema salsugineum HOM05D005027 ORTHO05D005978 1.4e-37 159.5 90 73.3
Aqoxy1G03982 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 2.5e-37 158.7 96 70.8
SalBow4G2697 Salvia bowleyana HOM05D005027 ORTHO05D005978 2.5e-37 158.7 83 86.7
A01p05480 Brassica napus HOM05D005027 ORTHO05D005978 3.2e-37 158.3 90 73.3
CARHR240800 Cardamine hirsuta HOM05D005027 ORTHO05D005978 3.2e-37 158.3 92 71.7
BcaC09g52077 Brassica carinata HOM05D005027 ORTHO05D005978 9.4e-37 156.8 90 72.2
C01p06080 Brassica napus HOM05D005027 ORTHO05D005978 9.4e-37 156.8 90 72.2
BolC1t00601H Brassica oleracea HOM05D005027 ORTHO05D005978 9.4e-37 156.8 90 72.2
AL7G18920 Arabidopsis lyrata HOM05D005027 ORTHO05D005978 2.1e-36 155.6 90 71.1
Zm00001eb153000 Zea mays HOM05D005027 ORTHO05D005978 3.6e-36 154.8 94 72.3
EL10Ac2g04019 Beta vulgaris HOM05D005027 ORTHO05D005978 4.7e-36 154.5 80 82.5
Sp7g30580 Schrenkiella parvula HOM05D005027 ORTHO05D005978 1.0e-35 153.3 90 70.0
Carub.0007s0768 Capsella rubella HOM05D005027 ORTHO05D005978 6.7e-35 150.6 90 68.9
SEGI_19892 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 2.6e-34 148.7 89 70.8
Ah.16g105780 Amaranthus hybridus HOM05D005027 ORTHO05D005978 7.4e-34 147.1 89 74.2
SEGI_39574 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 9.7e-34 146.7 89 69.7
Pp3c6_21520 Physcomitrium patens HOM05D005027 ORTHO05D005978 3.7e-33 144.8 89 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4691 Anthoceros agrestis HOM05D005027 ORTHO05D005978 4.8e-33 144.4 92 65.2
BraA01t00521Z Brassica rapa HOM05D005027 ORTHO05D005978 3.1e-32 141.7 122 54.1
SEGI_39055 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 1.2e-31 139.8 89 67.4
SMO147G0156 Selaginella moellendorffii HOM05D005027 ORTHO05D005978 2.0e-31 139.0 96 60.4
SGA_v2.0_scaffold103G29990 Striga asiatica HOM05D005027 ORTHO05D005978 1.2e-28 129.8 84 71.4
SEGI_36004 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 2.0e-26 122.5 79 63.3
SEGI_37641 Sequoiadendron giganteum HOM05D005027 ORTHO05D005978 3.3e-26 121.7 80 65.0
CAN.G552.8 Capsicum annuum HOM05D005027 ORTHO05D005978 1.4e-19 99.8 48 89.6
Dinv27900 Davidia involucrata HOM05D005027 ORTHO05D005978 3.1e-16 88.6 51 78.4
CAN.G400.1 Capsicum annuum HOM05D005027 ORTHO05D005978 1.6e-15 86.3 46 76.1
ECA248G1482 Erigeron canadensis HOM05D005027 ORTHO05D005978 2.0e-15 85.9 54 70.4
Cre02.g073900 Chlamydomonas reinhardtii HOM05D005027 ORTHO05D005978 7.7e-15 84.0 101 39.6
Cre02.g073950 Chlamydomonas reinhardtii HOM05D005027 ORTHO05D005978 7.7e-15 84.0 101 39.6
Actinidia30277 Actinidia chinensis HOM05D005027 ORTHO05D005978 1.0e-14 83.6 48 77.1
Cre08.g365851 Chlamydomonas reinhardtii HOM05D005027 ORTHO05D005978 1.0e-14 83.6 88 46.6
THA.LOC104820078 Tarenaya hassleriana HOM05D005027 ORTHO05D005978 1.0e-14 83.6 48 72.9
PRCOL_00003714 Prasinoderma coloniale HOM05D005027 ORTHO05D005978 2.2e-14 82.4 84 46.4
Mapoly0066s0017 Marchantia polymorpha HOM05D000433 ORTHO05D003991 1.7e-09 66.2 91 35.2
Psat2g145560 Pisum sativum HOM05D000433 ORTHO05D000443 2.2e-09 65.9 87 41.4
Medtr5g025230 Medicago truncatula HOM05D000433 ORTHO05D000443 8.3e-09 63.9 69 46.4
Mapoly0012s0198 Marchantia polymorpha HOM05D000433 ORTHO05D003991 1.1e-08 63.5 69 40.6
Mapoly0012s0197 Marchantia polymorpha HOM05D000433 ORTHO05D003991 2.4e-08 62.4 69 39.1
HanXRQChr02g0059541 Helianthus annuus HOM05D000433 ORTHO05D000443 4.1e-08 61.6 87 35.6
Mapoly0056s0019 Marchantia polymorpha HOM05D000433 ORTHO05D003991 5.4e-08 61.2 63 44.4
MCO01G787 Micromonas commoda HOM05D005027 ORTHO05D005978 5.4e-08 61.2 94 40.4
Migut.A00532 Erythranthe guttata HOM05D000433 ORTHO05D000443 1.2e-07 60.1 77 37.7
Migut.A00533 Erythranthe guttata HOM05D000433 ORTHO05D000443 1.2e-07 60.1 77 37.7
GSVIVG01024318001 Vitis vinifera HOM05D000433 ORTHO05D000443 1.6e-07 59.7 68 42.6
HanXRQChr17g0538661 Helianthus annuus HOM05D000433 ORTHO05D003991 2.0e-07 59.3 77 37.7
PRCOL_00002846 Prasinoderma coloniale HOM05D000433 ORTHO05D000443 2.7e-07 58.9 70 41.4
Aqoxy4G01785 Aquilegia oxysepala HOM05D001482 ORTHO05D001499 4.5e-07 58.2 41 58.5
Os07g0154100 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 1.7e-06 56.2 84 38.1
SalBow4G0534 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.7e-06 56.2 72 38.9
Zm00001eb309770 Zea mays HOM05D000433 ORTHO05D003991 1.7e-06 56.2 80 36.2
ClCG07G010550 Citrullus lanatus HOM05D000433 ORTHO05D000443 2.3e-06 55.8 82 35.4
MELO3C027057.2 Cucumis melo HOM05D000433 ORTHO05D000443 2.3e-06 55.8 82 35.4
ATR0568G165 Amborella trichopoda HOM05D000433 ORTHO05D000443 2.9e-06 55.5 95 32.6
Sed0008310 Sechium edule HOM05D000433 ORTHO05D000443 5.0e-06 54.7 85 32.9
CsaV3_4G007760 Cucumis sativus L. HOM05D000433 ORTHO05D000443 6.6e-06 54.3 85 32.9


User provided reference genes

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