Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.0e-311 1072.4 510 100.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.6e-225 785.4 477 75.7
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.9e-223 779.2 427 81.5
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 2.3e-221 772.3 514 71.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.3e-221 772.3 487 73.7
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 2.5e-220 768.8 432 79.2
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 9.6e-220 766.9 433 78.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 4.8e-219 764.6 463 73.9
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 6.2e-219 764.2 478 72.6
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.1e-218 763.5 448 77.5
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.4e-218 763.1 481 72.6
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 9.0e-218 760.4 448 77.0
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.0e-217 759.2 512 70.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.6e-217 758.8 512 70.3
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.4e-217 758.4 492 73.2
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 4.5e-217 758.1 433 78.1
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 4.5e-217 758.1 491 71.7
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 5.8e-217 757.7 449 77.7
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.3e-216 756.5 433 79.2
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.8e-216 755.0 433 78.1
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 4.9e-216 754.6 448 76.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.1e-215 753.4 477 72.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.1e-215 753.4 428 79.2
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 3.2e-215 751.9 451 77.2
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.6e-214 749.6 433 76.9
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 2.1e-214 749.2 452 75.9
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 2.7e-214 748.8 454 74.2
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 3.5e-214 748.4 428 79.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.8e-213 746.1 481 71.1
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.8e-213 746.1 514 67.7
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.0e-213 745.3 425 78.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 3.9e-213 745.0 428 77.8
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 8.7e-213 743.8 455 73.2
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-212 743.4 485 72.6
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 3.3e-212 741.9 433 76.7
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 4.3e-212 741.5 490 70.2
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 7.4e-212 740.7 423 79.0
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 9.6e-212 740.3 432 76.2
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.6e-211 739.6 423 78.3
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.6e-211 739.6 434 76.5
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.8e-211 738.8 448 75.7
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 4.8e-211 738.0 525 66.9
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 4.8e-211 738.0 434 76.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 6.3e-211 737.6 427 76.3
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.2e-211 737.3 487 69.2
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.1e-210 736.9 444 75.2
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.4e-210 736.5 492 69.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.4e-210 735.7 450 72.4
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 2.4e-210 735.7 509 66.8
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 4.1e-210 734.9 506 67.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 5.3e-210 734.6 489 69.7
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 6.9e-210 734.2 450 72.4
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 6.9e-210 734.2 454 72.9
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.0e-210 733.8 487 68.8
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.0e-209 732.6 432 76.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 2.0e-209 732.6 507 67.7
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.6e-209 732.3 427 76.1
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 3.4e-209 731.9 492 69.7
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-208 730.3 425 78.1
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.2e-208 729.2 488 69.3
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 6.5e-208 727.6 427 76.3
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 8.5e-208 727.2 526 68.6
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.2e-207 724.9 439 73.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.1e-206 722.6 438 74.7
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.1e-204 716.8 444 73.2
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.1e-204 716.8 432 74.1
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 4.3e-204 714.9 469 70.1
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.7e-204 714.5 466 71.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.3e-203 713.4 432 73.8
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.7e-203 711.8 454 71.4
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.3e-203 711.1 454 71.1
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 8.2e-203 710.7 489 67.1
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.4e-202 709.9 485 68.7
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 3.1e-202 708.8 485 68.5
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.0e-201 706.1 492 67.7
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.5e-201 704.9 486 68.5
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.5e-201 704.9 486 68.5
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 5.9e-201 704.5 429 73.9
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.9e-201 704.5 465 68.8
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.5e-200 700.7 466 70.4
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.4e-199 699.9 439 70.8
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 3.2e-199 698.7 429 72.3
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 4.2e-199 698.4 434 72.6
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.5e-199 698.0 432 70.6
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.2e-198 696.8 490 65.9
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.7e-198 695.7 429 72.0
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.5e-196 689.9 429 72.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.7e-196 688.0 478 68.4
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.3e-195 686.8 430 74.7
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 2.6e-193 679.1 457 67.8
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.9e-193 677.9 470 66.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.2e-190 670.2 517 61.1
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 3.0e-189 665.6 448 66.7
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.2e-189 664.8 436 66.5
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.1e-188 663.7 371 79.2
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 5.9e-185 651.4 440 68.6
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 9.4e-183 644.0 378 77.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.1e-182 642.9 380 76.8
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.1e-182 642.9 380 76.8
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 3.0e-181 639.0 465 66.5
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 4.1e-178 628.6 449 66.1
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.5e-175 620.2 442 66.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 6.1e-174 614.8 380 75.3
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.3e-173 612.8 343 79.3
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 6.8e-173 611.3 361 75.9
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.4e-170 601.7 428 65.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.3e-163 580.5 325 77.8
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.7e-163 578.9 425 65.9
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 4.9e-163 578.6 408 67.9
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 6.3e-163 578.2 417 62.6
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.1e-162 577.4 269 99.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.6e-161 573.5 518 55.6
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.1e-158 563.1 452 58.2
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.6e-158 562.4 439 59.5
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 7.0e-146 521.5 426 55.6
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.9e-143 513.5 426 60.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 3.6e-142 509.2 396 56.8
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.8e-141 506.9 321 70.4
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.8e-133 480.3 421 54.9
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.3e-127 458.4 256 79.7
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 6.2e-102 375.6 218 76.1
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.4e-98 364.4 448 41.7
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.5e-83 312.4 184 77.2
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 2.6e-76 290.4 162 80.9
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 7.0e-69 265.8 426 39.7
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.7e-64 249.2 357 39.5
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.7e-64 249.2 148 75.7
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.5e-58 230.7 128 80.5
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.2e-54 217.6 136 71.3
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.7e-54 216.9 110 81.8
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.1e-45 186.8 148 54.7
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.0e-43 182.2 118 72.0
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.8e-39 165.6 107 69.2
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.0e-36 157.9 185 45.9
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 6.0e-36 156.4 109 66.1
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 6.6e-35 152.9 186 46.2
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.3e-18 96.3 61 65.6
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.4e-15 87.4 59 62.7
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 6.9e-08 63.2 42 64.3


User provided reference genes

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