Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 0.0e+00 1567.4 817 100.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.5e-52 211.5 870 28.9
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.9e-47 195.3 823 29.2
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.1e-47 194.1 869 27.7
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-45 188.3 997 26.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.0e-41 175.3 472 33.5
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 5.8e-41 173.7 472 33.3
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-40 172.2 444 32.9
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 4.1e-39 167.5 911 26.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 5.4e-39 167.2 891 25.6
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 7.1e-39 166.8 897 27.0
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.6e-38 165.6 633 28.0
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.6e-38 165.6 448 32.6
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.6e-37 160.2 848 27.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 2.5e-36 158.3 853 26.7
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.3e-32 146.0 449 30.7
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.5e-28 131.7 470 30.4
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 8.1e-27 126.7 467 27.6
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-26 126.3 597 26.6
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.4e-26 125.2 907 26.4
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.1e-26 124.8 769 25.0
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 6.9e-26 123.6 632 27.1
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.3e-24 119.4 865 26.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 6.4e-24 117.1 915 25.4
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.4e-24 117.1 533 28.0
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.0e-21 109.8 834 25.4
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.5e-20 105.9 499 28.1
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.3e-19 102.8 536 25.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 2.1e-19 102.1 547 27.1
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 2.1e-19 102.1 567 25.9
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 4.8e-19 100.9 758 24.8
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 6.9e-18 97.1 586 25.3
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 7.6e-17 93.6 532 25.6
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.7e-16 92.4 544 25.7
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.4e-15 89.4 549 25.5
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.9e-15 89.0 529 25.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.4e-15 88.6 590 26.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.2e-15 88.2 595 25.0
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 5.4e-15 87.4 591 25.5
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.2e-14 86.3 911 22.7
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.6e-14 85.9 535 25.2
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.6e-14 85.9 567 22.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.6e-14 84.3 920 22.4
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.0e-14 84.0 576 24.0
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.0e-14 84.0 636 24.7
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-13 82.8 608 25.2
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.3e-13 82.0 884 24.5
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.1e-12 79.7 583 24.2
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.9e-12 79.0 528 25.4
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.5e-12 78.6 579 23.3
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.4e-12 77.0 586 23.7
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.6e-12 76.6 266 28.6
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 9.6e-12 76.6 546 26.0
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.6e-12 76.6 576 23.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.6e-12 76.6 578 24.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.3e-11 76.3 586 23.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-11 76.3 524 23.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.6e-11 75.9 893 22.6
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.1e-11 75.5 568 22.5
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.8e-11 74.3 559 22.9
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.8e-10 72.4 536 24.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.8e-10 72.4 593 24.1
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.8e-10 72.4 539 24.3
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 3.1e-10 71.6 535 24.1
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 4.0e-10 71.2 297 26.6
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 5.3e-10 70.9 259 30.5
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 6.9e-10 70.5 501 24.4
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 6.9e-10 70.5 506 26.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.5e-09 69.3 543 24.7
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 3.4e-09 68.2 251 26.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.8e-09 67.4 590 23.7
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 7.6e-09 67.0 263 28.5
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.3e-08 66.2 293 26.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.7e-08 65.9 558 24.9
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.2e-08 65.5 265 26.4
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.2e-08 65.5 626 24.3
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.9e-08 65.1 525 25.0
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.8e-08 64.7 249 24.9
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 8.4e-08 63.5 247 29.1
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.1e-07 63.2 553 25.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.4e-07 62.8 484 23.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.4e-07 62.0 587 22.8
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 3.2e-07 61.6 478 25.3
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.2e-07 61.6 558 23.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 5.5e-07 60.8 478 25.5
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 9.3e-07 60.1 255 26.3
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.1e-06 58.9 234 28.2
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.7e-06 58.5 257 25.7
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 3.5e-06 58.2 477 25.2
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 4.6e-06 57.8 473 24.3
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 4.6e-06 57.8 244 28.7
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 4.6e-06 57.8 554 23.6
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 4.6e-06 57.8 455 25.1
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 6.0e-06 57.4 250 28.0
unitig_85.g27152 Utricularia gibba HOM05D004021 ORTHO05D003767 6.0e-06 57.4 229 28.8
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 7.9e-06 57.0 495 25.5


User provided reference genes

Program Settings