Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.6e-205 719.2 353 100.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.3e-164 582.4 348 78.4
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.8e-162 575.5 349 79.9
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.8e-162 575.5 348 79.0
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 5.4e-161 571.2 350 78.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-160 569.7 344 79.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.0e-160 569.3 349 78.2
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.5e-160 568.5 345 76.5
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.7e-159 566.2 378 73.8
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.9e-159 565.5 349 77.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.8e-159 565.1 344 78.5
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 5.0e-159 564.7 347 77.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 5.6e-158 561.2 350 77.4
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 7.3e-158 560.8 349 77.1
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 7.3e-158 560.8 347 76.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.2e-157 560.1 348 78.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.8e-157 558.9 348 76.7
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.6e-157 558.5 349 76.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.7e-157 558.1 348 76.4
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.7e-157 558.1 348 76.4
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.0e-156 557.0 349 76.5
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.0e-156 557.0 349 75.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.3e-156 555.8 349 75.4
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.2e-155 553.5 348 76.4
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 2.6e-155 552.4 357 75.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 5.7e-155 551.2 349 76.8
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.5e-155 550.8 347 75.8
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 9.8e-155 550.4 350 76.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 9.8e-155 550.4 350 76.0
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.7e-154 549.7 347 75.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.2e-154 549.3 350 75.7
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 6.4e-154 547.7 350 76.3
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 6.4e-154 547.7 349 75.1
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.4e-153 546.6 328 78.4
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.8e-153 546.2 351 74.1
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.4e-153 545.8 342 76.3
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 9.2e-153 543.9 348 74.4
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.2e-152 543.5 349 75.9
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.6e-152 543.1 349 76.5
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 7.8e-152 540.8 350 74.0
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.7e-151 539.7 350 74.9
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.3e-151 539.3 348 75.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 2.3e-151 539.3 348 75.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 8.6e-151 537.3 349 75.4
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 4.3e-150 535.0 352 75.9
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 4.3e-150 535.0 350 74.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.3e-150 534.3 374 70.1
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-149 532.7 349 74.8
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.3e-148 529.3 348 75.3
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 4.4e-147 525.0 350 71.4
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 5.8e-147 524.6 349 74.8
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.2e-146 522.7 351 74.4
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.4e-145 520.0 349 71.3
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 4.1e-145 518.5 349 72.8
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 7.0e-145 517.7 349 73.4
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 7.0e-145 517.7 349 70.8
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 9.2e-145 517.3 346 72.8
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.2e-144 516.9 348 71.8
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.0e-144 516.2 351 72.1
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 3.5e-144 515.4 349 70.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.5e-144 515.4 348 72.4
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.5e-144 515.4 345 70.7
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.7e-143 513.1 409 63.8
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.3e-143 512.7 341 71.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 3.9e-143 511.9 302 80.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.0e-143 511.5 349 73.1
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.6e-143 511.1 349 73.4
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 8.6e-143 510.8 323 75.9
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.1e-142 510.4 349 72.2
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.3e-142 508.8 301 80.1
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-141 506.1 338 73.1
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 2.8e-141 505.8 376 66.2
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 6.2e-141 504.6 301 78.7
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.5e-139 500.0 333 73.6
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.5e-139 500.0 348 72.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.0e-139 499.6 348 69.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 2.0e-139 499.6 348 70.4
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 4.9e-138 495.0 346 70.5
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 8.3e-138 494.2 345 69.3
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.4e-137 492.7 347 68.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.4e-137 492.7 317 76.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 3.2e-137 492.3 343 67.6
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.4e-137 491.5 348 69.8
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 7.8e-136 487.6 344 67.4
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 7.8e-136 487.6 346 69.1
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.3e-135 486.1 348 66.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 5.1e-135 485.0 343 67.1
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 5.1e-135 485.0 276 83.0
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.5e-134 482.6 348 68.7
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.3e-134 482.3 363 65.3
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.3e-134 481.9 355 67.6
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.3e-134 481.1 301 76.4
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 4.7e-133 478.4 343 65.9
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 8.1e-133 477.6 348 65.8
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.4e-132 476.9 343 65.9
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.4e-132 476.9 344 65.7
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.3e-132 476.1 344 66.0
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 8.9e-132 474.2 347 64.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.4e-131 472.2 312 73.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 7.6e-131 471.1 348 63.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.3e-130 470.3 356 66.0
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.4e-130 468.0 333 70.6
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.1e-129 467.2 348 62.9
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.8e-128 461.1 348 63.2
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.3e-126 455.7 348 65.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 4.3e-126 455.3 302 71.5
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 5.6e-126 454.9 328 65.2
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.4e-124 449.5 264 79.9
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.5e-123 446.8 323 68.7
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.5e-123 446.8 320 66.9
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.4e-121 440.3 328 67.4
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.4e-121 439.5 348 62.9
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.7e-120 436.0 320 65.6
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-114 417.2 331 61.3
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.6e-112 408.7 344 60.5
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.3e-111 406.4 240 80.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.0e-108 395.6 218 85.3
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 4.0e-108 395.6 244 77.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 9.9e-107 391.0 297 64.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.2e-106 389.8 253 75.1
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.9e-106 389.4 248 70.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-104 383.3 324 60.8
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.9e-103 379.0 376 53.7
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.9e-102 376.7 239 76.6
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 9.6e-102 374.4 239 74.9
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 8.2e-101 371.3 217 83.9
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 9.0e-100 367.9 377 50.9
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-99 366.7 374 55.1
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.5e-96 355.9 350 53.1
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.3e-95 354.0 374 50.8
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-93 347.4 289 59.2
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.3e-92 342.0 403 47.4
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 7.6e-91 338.2 354 50.6
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.0e-90 335.5 292 58.9
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 6.5e-90 335.1 210 74.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 2.5e-89 333.2 295 54.6
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 2.5e-89 333.2 237 67.1
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.4e-84 317.4 281 59.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.9e-82 309.7 194 77.3
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 6.5e-82 308.5 194 76.3
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.9e-80 301.6 224 67.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.3e-79 300.1 301 53.5
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 3.1e-76 289.7 193 68.4
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.1e-76 288.1 194 73.7
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.0e-74 284.6 280 50.0
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.0e-71 274.6 331 49.2
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.5e-65 254.2 194 66.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 3.3e-62 243.0 134 83.6
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.7e-53 214.2 159 66.0
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.8e-50 203.0 332 41.3
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.6e-48 196.4 115 82.6
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 6.8e-47 192.2 124 72.6
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.5e-46 191.0 341 33.1
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.8e-45 186.8 331 40.5
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.8e-44 184.1 235 48.1
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.8e-39 167.5 222 39.2
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.0e-35 154.1 301 29.9
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 6.0e-35 152.5 89 76.4
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 1.1e-33 148.3 154 47.4
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.8e-24 117.1 207 33.3
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 9.9e-22 108.6 74 74.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 7.8e-19 99.0 69 63.8
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.7e-18 97.8 69 63.8
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.1e-15 88.6 66 65.2
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.4e-15 87.4 74 59.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.4e-14 83.6 67 58.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 4.9e-13 79.7 49 75.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.1e-09 68.6 40 75.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.1e-08 62.4 55 54.5
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.0e-07 60.1 55 52.7
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.0e-07 58.9 72 50.0
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 7.6e-06 55.8 48 52.1


User provided reference genes

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