Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 1.6e-169 599.4 303 100.0
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 5.9e-132 474.6 304 77.3
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 2.9e-131 472.2 305 77.4
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 6.5e-131 471.1 303 78.5
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 1.4e-130 469.9 308 76.6
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 2.5e-130 469.2 304 77.0
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 9.4e-130 467.2 308 76.3
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 3.9e-128 461.8 303 77.2
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 2.6e-127 459.1 310 75.2
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 9.7e-127 457.2 303 75.9
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 4.5e-124 448.4 303 74.3
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 7.7e-124 447.6 319 72.7
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 1.3e-123 446.8 303 73.6
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 1.3e-123 446.8 303 73.6
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.9e-122 443.0 304 75.0
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 3.2e-122 442.2 303 72.9
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.2e-121 440.3 303 72.9
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 2.1e-121 439.5 303 72.6
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 2.7e-121 439.1 303 72.3
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 4.7e-121 438.3 305 73.4
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 6.1e-121 438.0 304 73.7
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.8e-120 436.4 304 73.0
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 2.3e-120 436.0 303 71.0
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 6.7e-120 434.5 304 73.4
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 6.7e-120 434.5 290 74.8
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 1.5e-119 433.3 305 72.8
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 2.0e-119 433.0 304 73.4
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.0e-119 433.0 303 70.6
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 2.6e-119 432.6 304 71.4
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 3.3e-119 432.2 304 72.7
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 4.4e-119 431.8 305 72.5
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 9.7e-119 430.6 303 71.9
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 1.3e-118 430.3 303 72.3
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 2.2e-118 429.5 303 70.3
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 2.2e-118 429.5 304 73.4
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 2.2e-118 429.5 301 71.1
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 4.8e-118 428.3 303 70.6
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 8.2e-118 427.6 303 71.6
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 1.1e-117 427.2 300 71.3
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 2.4e-117 426.0 303 71.9
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.4e-117 426.0 303 70.0
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 3.1e-117 425.6 303 71.9
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 4.1e-117 425.2 302 70.9
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 9.1e-117 424.1 293 72.0
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 1.6e-116 423.3 304 71.1
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 1.0e-115 420.6 303 70.3
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 1.3e-115 420.2 302 71.5
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 1.3e-115 420.2 303 69.6
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 2.9e-115 419.1 303 73.6
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 5.0e-115 418.3 302 69.9
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 5.0e-115 418.3 303 69.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.5e-115 417.9 305 69.5
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.5e-114 416.8 288 72.6
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 3.2e-114 415.6 303 70.6
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 2.1e-113 412.9 305 69.8
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 3.6e-113 412.1 303 70.6
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 3.6e-113 412.1 304 69.4
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 6.1e-113 411.4 304 69.7
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 8.0e-113 411.0 289 70.2
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 1.4e-112 410.2 302 67.2
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 2.3e-112 409.5 286 71.3
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 5.2e-112 408.3 324 65.4
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 5.2e-112 408.3 286 70.3
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 6.7e-112 407.9 300 69.3
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 1.2e-111 407.1 302 68.9
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 1.2e-111 407.1 284 72.9
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 5.7e-111 404.8 305 68.5
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 9.7e-111 404.1 302 66.2
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 9.7e-111 404.1 303 69.0
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 9.7e-111 404.1 305 67.9
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 1.3e-110 403.7 303 67.7
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 1.3e-110 403.7 303 65.3
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 8.2e-110 401.0 303 68.3
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 1.8e-109 399.8 303 68.6
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 2.4e-109 399.4 302 68.9
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 2.4e-109 399.4 306 68.6
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 4.1e-109 398.7 302 68.2
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 5.3e-109 398.3 305 66.6
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 7.0e-109 397.9 301 68.1
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 5.9e-108 394.8 304 67.8
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 7.7e-108 394.4 303 67.3
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 1.0e-107 394.0 303 66.7
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 1.3e-107 393.7 304 67.8
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 2.2e-107 392.9 379 56.5
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 3.8e-107 392.1 304 68.1
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 3.8e-107 392.1 304 68.1
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 5.0e-107 391.7 291 70.4
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 3.2e-106 389.0 306 68.3
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 3.2e-106 389.0 287 69.7
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 3.2e-106 389.0 303 66.7
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 1.2e-105 387.1 300 65.0
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 2.3e-104 382.9 288 69.1
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 1.7e-102 376.7 457 48.6
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 4.8e-102 375.2 288 68.4
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.6e-100 370.2 305 62.6
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.7e-99 366.7 255 72.9
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 2.3e-99 366.3 304 64.8
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 8.6e-99 364.4 282 67.4
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 1.0e-96 357.5 305 64.9
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 2.2e-94 349.7 269 68.4
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 3.5e-92 342.4 289 60.2
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 7.8e-92 341.3 289 59.5
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.8e-91 339.0 264 67.0
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 1.7e-86 323.6 301 60.1
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 2.9e-86 322.8 294 60.5
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 7.8e-84 314.7 199 75.9
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 5.6e-82 308.5 221 69.2
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 4.7e-81 305.4 212 71.7
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 3.1e-80 302.8 302 54.6
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 5.2e-80 302.0 290 55.9
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 1.2e-79 300.8 268 60.4
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 4.4e-79 298.9 302 54.3
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 1.6e-76 290.4 292 54.8
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 2.0e-76 290.0 283 56.2
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 4.4e-71 272.3 164 80.5
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 6.4e-70 268.5 283 49.5
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 1.4e-69 267.3 282 51.4
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 3.5e-68 262.7 168 76.2
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 1.9e-66 256.9 280 48.9
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 4.7e-65 252.3 168 73.8
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 5.2e-64 248.8 287 48.8
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 8.9e-64 248.1 278 47.5
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 1.5e-63 247.3 262 55.3
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 1.9e-58 230.3 284 47.2
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 4.3e-58 229.2 279 47.7
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 3.4e-55 219.5 169 69.2
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 5.1e-51 205.7 276 49.3
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 1.4e-48 197.6 224 53.1
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 1.1e-42 177.9 137 68.6
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.0e-39 167.2 117 69.2
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 3.0e-35 153.3 146 57.5
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 9.4e-21 105.1 137 46.0
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 2.4e-16 90.5 105 46.7
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 8.8e-11 72.0 250 32.8
ATR0326G034 Amborella trichopoda HOM05D005681 ORTHO05D068436 7.7e-07 58.9 61 45.9
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 8.5e-06 55.5 187 32.1


User provided reference genes

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