Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.5e-116 422.2 216 100.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 5.5e-108 394.4 216 93.1
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.2e-107 393.3 216 91.7
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.7e-107 392.1 214 93.0
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 4.7e-107 391.3 216 91.2
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 7.9e-107 390.6 216 91.7
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.0e-106 390.2 216 91.2
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.0e-106 390.2 216 91.2
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 3.9e-106 388.3 216 90.3
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 5.1e-106 387.9 216 92.1
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 90.7
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 4.4e-105 384.8 216 89.8
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 89.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 89.4
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 90.7
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 89.4
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 88.9
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 89.8
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 89.8
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 88.9
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 88.9
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 88.4
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 88.9
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 88.9
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 88.9
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 88.9
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 88.9
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.0
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.4
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.4
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.0
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 88.0
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 88.0
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 88.0
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 88.9
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 88.9
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.8
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 88.4
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 88.9
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 88.4
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 88.9
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 87.5
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 87.5
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 3.1e-103 378.6 215 88.8
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 88.0
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 88.9
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 88.4
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.4
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 87.5
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 88.0
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 88.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.0
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.4
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.0
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.0
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.4
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.4
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 89.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 87.0
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 5.9e-102 374.4 220 87.7
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 87.0
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.6
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 86.1
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 87.5
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 87.0
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 87.0
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 3.8e-101 371.7 221 86.0
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.0
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.5
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.5
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 87.0
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 86.6
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 86.1
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.0
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 86.1
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.5
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.5e-100 367.9 217 86.6
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 85.6
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.6
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 85.2
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 85.6
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 84.3
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 85.6
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 85.6
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 85.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 3.6e-99 365.2 215 85.1
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 86.1
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 85.6
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 8.0e-99 364.0 221 85.1
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.6
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.8e-98 362.8 215 84.7
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.8e-98 362.8 227 83.3
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 82.9
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.6
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.2
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.0e-98 361.7 215 85.1
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 85.2
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 85.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 85.2
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 84.3
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 84.3
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 4.8e-96 354.8 216 82.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 4.1e-95 351.7 216 79.6
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 7.0e-95 350.9 199 89.9
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.0e-94 349.4 216 83.8
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.3e-93 346.7 216 82.9
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 84.3
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 5.0e-93 344.7 218 81.7
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.5e-92 342.4 216 78.7
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.1e-91 339.3 216 81.9
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 4.7e-91 338.2 221 79.2
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 80.1
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 77.3
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 78.2
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 78.2
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 78.2
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 8.3e-88 327.4 216 77.8
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 75.9
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 9.1e-87 323.9 215 78.6
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 79.2
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 4.5e-86 321.6 214 76.2
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.2e-85 319.3 216 73.1
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 1.4e-82 310.1 165 92.7
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 4.0e-82 308.5 165 91.5
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.2e-81 307.0 216 75.0
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 5.7e-81 304.7 165 90.9
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 8.3e-80 300.8 276 61.2
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.0e-77 293.9 216 72.2
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.7e-77 293.1 216 73.1
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.9e-76 289.7 216 71.8
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 7.3e-76 287.7 216 71.3
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 9.5e-76 287.3 216 71.3
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-74 281.6 216 68.5
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.2e-73 280.4 203 74.9
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 3.4e-73 278.9 217 67.7
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.3e-72 276.9 217 67.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.7e-70 269.2 178 81.5
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 5.6e-68 261.5 165 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.2e-67 260.4 144 82.6
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.6e-67 260.0 353 47.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 4.7e-67 258.5 217 66.8
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 9.2e-63 244.2 219 60.3
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 4.7e-59 231.9 234 56.8
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 4.3e-52 208.8 108 88.9
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 4.3e-52 208.8 108 88.9
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.0e-50 202.2 273 50.9
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 3.4e-49 199.1 219 49.3
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.6e-46 190.3 211 51.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 1.6e-46 190.3 136 76.5
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.1e-42 177.6 138 71.7
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.7e-40 170.2 114 79.8
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 3.5e-38 162.5 85 87.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.0e-38 161.8 106 74.5
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.9e-37 159.1 84 84.5
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.1e-36 157.5 81 88.9
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.3e-35 154.1 81 87.7
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 83.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 83.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 83.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 83.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 4.8e-35 152.1 101 83.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 2.1e-30 136.7 71 84.5
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.2e-19 98.6 63 85.7
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.3e-18 95.5 74 73.0
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.8e-16 89.4 68 72.1
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 6.3e-11 72.0 39 79.5
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 2.4e-10 70.1 39 76.9
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 6.9e-10 68.6 48 68.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 6.9e-10 68.6 48 68.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 6.9e-10 68.6 48 68.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 2.6e-09 66.6 48 66.7


User provided reference genes

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