Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 1.1e-172 610.1 368 100.0
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.0e-50 203.0 331 58.0
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 8.9e-50 201.8 345 57.1
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 5.8e-49 199.1 331 57.7
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 1.3e-48 198.0 343 56.3
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.2e-48 197.2 345 55.7
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 8.3e-48 195.3 346 55.5
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.1e-47 194.9 296 60.1
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 2.1e-46 190.7 290 61.0
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.7e-46 190.3 347 54.2
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.0e-45 188.3 340 54.7
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 8.6e-45 185.3 289 59.2
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 3.1e-42 176.8 285 60.4
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 3.1e-42 176.8 333 52.6
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.5e-41 174.5 291 56.0
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 5.8e-41 172.6 335 51.6
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 5.8e-41 172.6 326 53.7
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 5.8e-41 172.6 287 57.8
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 7.6e-41 172.2 343 52.5
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 2.2e-40 170.6 283 56.9
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 4.9e-40 169.5 337 52.5
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 4.9e-40 169.5 351 52.4
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.1e-39 168.3 337 52.2
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.9e-39 167.5 329 52.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 2.4e-39 167.2 326 52.5
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 5.4e-39 166.0 283 55.5
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 9.2e-39 165.2 282 54.3
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.2e-38 164.9 293 56.0
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.7e-38 163.7 332 51.8
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 3.5e-38 163.3 299 55.2
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 7.8e-38 162.2 304 55.3
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.7e-37 161.0 231 65.8
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 2.3e-37 160.6 233 64.4
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 3.0e-37 160.2 332 51.5
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 3.0e-37 160.2 282 57.8
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 5.1e-37 159.5 281 55.9
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.1e-36 158.3 295 53.2
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 1.5e-36 157.9 260 56.2
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.5e-36 157.9 324 51.5
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.9e-36 157.5 277 46.9
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 2.5e-36 157.1 299 53.8
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 4.3e-36 156.4 283 54.4
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 5.6e-36 156.0 281 56.2
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 9.6e-36 155.2 322 50.6
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 9.6e-36 155.2 305 53.4
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 9.6e-36 155.2 345 51.3
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.6e-35 154.5 290 56.6
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.1e-35 154.1 299 53.5
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 8.1e-35 152.1 348 49.1
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.1e-34 151.8 256 59.4
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.1e-34 151.8 407 44.5
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 1.4e-34 151.4 285 55.1
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.8e-34 151.0 332 50.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.8e-34 151.0 231 61.9
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 2.4e-34 150.6 278 55.0
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.1e-34 150.2 197 69.5
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 3.1e-34 150.2 278 53.6
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 9.0e-34 148.7 299 46.8
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 2.6e-33 147.1 281 57.7
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 2.6e-33 147.1 276 55.8
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 2.6e-33 147.1 339 48.1
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 4.4e-33 146.4 281 53.0
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 4.4e-33 146.4 318 44.7
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 4.4e-33 146.4 339 49.6
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 7.6e-33 145.6 259 57.5
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 7.6e-33 145.6 294 52.4
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 7.6e-33 145.6 414 43.2
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 1.3e-32 144.8 281 52.7
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.7e-32 144.4 197 68.0
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 2.2e-32 144.1 231 61.0
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 6.4e-32 142.5 197 69.0
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 1.9e-31 141.0 294 51.4
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 3.2e-31 140.2 281 52.7
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 4.2e-31 139.8 292 51.0
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 4.2e-31 139.8 197 67.5
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 5.4e-31 139.4 326 48.5
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 7.1e-31 139.0 338 47.3
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 9.3e-31 138.7 153 54.9
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 4.6e-30 136.3 308 51.0
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 7.8e-30 135.6 326 48.5
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.3e-29 134.8 295 53.2
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 2.3e-29 134.0 173 51.4
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 8.7e-29 132.1 324 47.8
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 1.1e-28 131.7 233 58.8
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.1e-28 131.7 233 57.5
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.5e-28 131.3 280 52.1
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 1.9e-28 131.0 300 45.3
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 2.5e-28 130.6 277 52.3
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 3.3e-28 130.2 323 46.7
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 1.6e-27 127.9 184 69.0
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.8e-27 127.1 255 54.1
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 2.8e-27 127.1 291 50.9
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.1e-26 125.2 293 51.5
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 2.4e-26 124.0 351 34.5
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 3.1e-26 123.6 299 49.8
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 3.1e-26 123.6 347 46.1
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 4.0e-26 123.2 265 53.2
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 7.6e-25 119.0 229 57.6
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 6.4e-24 115.9 156 46.8
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 6.4e-24 115.9 157 47.8
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 4.2e-23 113.2 198 41.9
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 4.2e-23 113.2 277 49.8
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.4e-23 112.8 134 56.7
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.6e-22 111.3 66 81.8
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 4.6e-22 109.8 157 47.1
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.0e-21 107.1 120 56.7
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 4.3e-20 103.2 149 47.7
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 1.3e-19 101.7 194 58.8
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 1.6e-19 101.3 314 45.2
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.6e-19 101.3 162 54.3
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 3.7e-19 100.1 265 47.5
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.8e-18 97.8 222 53.2
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 4.0e-18 96.7 134 46.3
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 9.0e-18 95.5 170 42.9
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.3e-11 75.1 36 100.0
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 2.8e-11 73.9 72 50.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 1.4e-10 71.6 81 46.9
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.8e-10 71.2 81 46.9
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 2.6e-09 67.4 96 43.8
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 5.8e-09 66.2 94 42.6
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-08 64.7 72 45.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.2e-08 64.3 69 43.5
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 8.4e-08 62.4 137 26.3
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 8.4e-08 62.4 72 44.4
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 8.4e-08 62.4 146 64.4
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 8.4e-08 62.4 43 72.1
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 8.4e-08 62.4 68 45.6
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-07 62.0 72 44.4
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.1e-07 62.0 81 40.7
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.9e-07 61.2 35 85.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.9e-07 61.2 62 45.2
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.9e-07 61.2 62 45.2
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 4.2e-07 60.1 72 43.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-07 60.1 72 43.1
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 4.2e-07 60.1 73 45.2
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 4.2e-07 60.1 152 33.6
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 4.2e-07 60.1 126 38.1
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 7.1e-07 59.3 144 34.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.7e-06 57.4 111 36.0
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 4.6e-06 56.6 86 36.0
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 6.1e-06 56.2 107 33.6


User provided reference genes

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