Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08970 Coffea canephora HOM05D008234 ORTHO05D010422 5.4e-208 727.6 423 100.0
Dinv14224 Davidia involucrata HOM05D008234 ORTHO05D010422 7.0e-107 391.7 386 52.6
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 3.8e-97 359.4 387 49.4
QL12p026340 Quercus lobata HOM05D008234 ORTHO05D010422 5.0e-97 359.0 420 57.4
MSTRG.25893 Avicennia marina HOM05D008234 ORTHO05D010422 2.5e-96 356.7 432 47.9
SGA_v2.0_scaffold185G40113 Striga asiatica HOM05D008234 ORTHO05D010422 2.4e-91 340.1 381 47.2
Prupe.1G453000 Prunus persica HOM05D008234 ORTHO05D010422 3.1e-91 339.7 401 49.6
CiPaw.08G023300 Carya illinoinensis HOM05D008234 ORTHO05D010422 2.0e-90 337.0 383 57.7
RcHm_v2.0_Chr6g0305711 Rosa chinensis HOM05D008234 ORTHO05D010422 5.9e-90 335.5 411 53.3
Migut.A00244 Erythranthe guttata HOM05D008234 ORTHO05D010422 5.0e-89 332.4 386 47.7
Aqoxy7G03839 Aquilegia oxysepala HOM05D008234 ORTHO05D010422 1.1e-88 331.3 380 55.8
Lj7P707T11 Lonicera japonica HOM05D008234 ORTHO05D010422 4.3e-88 329.3 332 50.9
Lj1g0008618 Lotus japonicus HOM05D008234 ORTHO05D010422 4.7e-87 325.9 386 46.6
Hma1.2p1_1255F.1_g270650 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 1.0e-86 324.7 331 50.2
SalBow4G0332 Salvia bowleyana HOM05D008234 ORTHO05D010422 3.1e-86 323.2 387 47.8
Lsat_1_v5_gn_6_11021 Lactuca sativa HOM05D008234 ORTHO05D010422 2.4e-83 313.5 399 44.1
TPR.G12012 Trifolium pratense HOM05D008234 ORTHO05D010422 7.8e-82 308.5 383 44.6
MD08G1118800 Malus domestica HOM05D008234 ORTHO05D010422 1.1e-80 304.7 392 53.1
Sabra06G0190100 Salix brachista HOM05D008234 ORTHO05D010422 1.1e-80 304.7 379 54.1
TAR626G1903 Trochodendron aralioides HOM05D008234 ORTHO05D010422 1.5e-80 304.3 405 44.9
HanXRQChr02g0048071 Helianthus annuus HOM05D008234 ORTHO05D010422 4.3e-80 302.8 406 42.1
Ah.16g105160 Amaranthus hybridus HOM05D008234 ORTHO05D010422 4.7e-79 299.3 416 40.6
Hund19548 Selenicereus undatus HOM05D008234 ORTHO05D010422 1.8e-78 297.4 386 51.6
Medtr1g008360 Medicago truncatula HOM05D008234 ORTHO05D010422 3.1e-78 296.6 386 52.3
Ca_12814_v3 Cicer arietinum L. HOM05D008234 ORTHO05D010422 1.2e-77 294.7 415 41.2
CDE04G1659 Ceratophyllum demersum HOM05D008234 ORTHO05D010422 2.6e-77 293.5 388 41.8
GSVIVG01035674001 Vitis vinifera HOM05D008234 ORTHO05D010422 8.3e-76 288.5 387 51.2
TWI34G1157 Tripterygium wilfordii HOM05D008234 ORTHO05D010422 1.1e-75 288.1 403 41.9
Manes.03G062500 Manihot esculenta HOM05D008234 ORTHO05D010422 9.2e-75 285.0 393 50.4
CSS0041765 Camellia sinensis var. sinensis HOM05D008234 ORTHO05D010422 4.6e-74 282.7 388 51.5
Ciclev10008407m.g Citrus clementina HOM05D008234 ORTHO05D010422 3.9e-73 279.6 386 51.3
AUR62023021 Chenopodium quinoa HOM05D008234 ORTHO05D010422 2.8e-71 273.5 382 44.2
FAN20G2600 Fragaria x ananassa HOM05D008234 ORTHO05D010422 4.7e-71 272.7 324 44.4
FAN15G0125 Fragaria x ananassa HOM05D008234 ORTHO05D010422 2.9e-68 263.5 338 53.0
Potri.006G243000 Populus trichocarpa HOM05D008234 ORTHO05D010422 1.4e-67 261.2 383 49.6
Thecc.03G110200 Theobroma cacao HOM05D008234 ORTHO05D010422 2.4e-67 260.4 383 49.1
Oeu011264.1 Olea europaea HOM05D008234 ORTHO05D010422 3.2e-67 260.0 296 59.5
EL10Ac2g04079 Beta vulgaris HOM05D008234 ORTHO05D010422 1.6e-66 257.7 410 47.3
Duzib068G0878 Durio zibethinus HOM05D008234 ORTHO05D010422 2.7e-66 256.9 393 49.4
FvH4_2g36160 Fragaria vesca HOM05D008234 ORTHO05D010422 2.7e-66 256.9 338 52.1
Gohir.A03G071900 Gossypium hirsutum HOM05D008234 ORTHO05D010422 3.5e-66 256.5 321 53.6
Glyma.14G141400 Glycine max HOM05D008234 ORTHO05D010422 1.7e-65 254.2 386 39.6
Zm00001eb004480 Zea mays HOM05D008234 ORTHO05D010422 1.2e-63 248.1 388 35.8
Os03g0159700 Oryza sativa ssp. japonica HOM05D008234 ORTHO05D010422 3.6e-63 246.5 419 35.6
COL.COLO4_28841 Corchorus olitorius HOM05D008234 ORTHO05D010422 4.0e-62 243.0 374 47.3
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 3.5e-58 229.9 387 37.7
Cfa013340 Carpinus fangiana HOM05D001758 ORTHO05D005969 1.3e-57 228.0 368 48.6
Psat6g034160 Pisum sativum HOM05D008234 ORTHO05D010422 1.7e-57 227.6 410 38.3
Phvul.001G078800 Phaseolus vulgaris HOM05D008234 ORTHO05D010422 5.1e-57 226.1 388 39.2
Psat6g034200 Pisum sativum HOM05D008234 ORTHO05D010422 8.7e-57 225.3 418 36.1
ECA233G2242 Erigeron canadensis HOM05D008234 ORTHO05D010422 4.7e-55 219.5 294 40.5
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 2.6e-53 213.8 430 41.9
Haze_21845 Corylus avellana HOM05D008234 ORTHO05D010422 1.0e-49 201.8 360 44.7
HPP92_009609 Vanilla planifolia HOM05D008234 ORTHO05D010422 2.5e-48 197.2 342 34.8
AUR62009335 Chenopodium quinoa HOM05D008234 ORTHO05D010422 3.3e-48 196.8 290 39.3
Gorai.003G103400 Gossypium raimondii HOM05D008234 ORTHO05D001322 1.6e-47 194.5 287 50.9
Nn2g11729 Nelumbo nucifera HOM05D008234 ORTHO05D010422 2.0e-45 187.6 424 42.5
CsaV3_3G047390 Cucumis sativus L. HOM05D008234 ORTHO05D010422 1.6e-42 177.9 276 37.0
MELO3C003586.2 Cucumis melo HOM05D008234 ORTHO05D010422 6.0e-42 176.0 280 35.7
Gohir.D03G098600 Gossypium hirsutum HOM05D008234 ORTHO05D010422 3.4e-37 160.2 175 49.7
Gohir.D03G098650 Gossypium hirsutum HOM05D008234 ORTHO05D010422 6.4e-36 156.0 134 60.4
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.1e-32 145.2 302 30.8
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 2.1e-26 124.4 270 30.4
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 7.4e-08 62.8 386 28.5
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 8.2e-07 59.3 357 27.5
AagrBONN_evm.TU.Sc2ySwM_117.627 Anthoceros agrestis HOM05D006414 ORTHO05D007780 5.3e-06 56.6 171 26.3
Ca_17703_v3 Cicer arietinum L. HOM05D006414 ORTHO05D007780 5.3e-06 56.6 96 37.5
Medtr8g091670 Medicago truncatula HOM05D006414 ORTHO05D007780 9.1e-06 55.8 86 39.5
Nn4g22778 Nelumbo nucifera HOM05D000001 ORTHO05D000003 9.1e-06 55.8 132 28.8
Nitab4.5_0002133g0010 Nicotiana tabacum HOM05D006414 ORTHO05D007780 9.1e-06 55.8 131 32.8


User provided reference genes

Program Settings