Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 6.7e-37 156.8 75 100.0
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 7.7e-33 143.3 75 94.7
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 9.1e-26 119.8 63 93.7
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 2.0e-25 118.6 63 93.7
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.0e-20 102.1 60 78.3
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 2.0e-20 102.1 60 78.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.7e-20 99.8 60 76.7
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.2e-19 98.6 60 76.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.7e-19 97.8 58 72.4
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 4.1e-18 94.4 60 75.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 1.3e-16 89.4 61 72.1
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.7e-16 89.0 60 71.7
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 1.7e-16 89.0 60 71.7
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 2.2e-16 88.6 60 71.7
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 1.1e-15 86.3 63 69.8
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 3.2e-15 84.7 58 70.7
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 3.2e-15 84.7 58 70.7
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 3.2e-15 84.7 58 70.7
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 3.2e-15 84.7 60 68.3
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 4.2e-15 84.3 58 69.0
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 4.2e-15 84.3 60 63.3
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 5.5e-15 84.0 58 69.0
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 7.2e-15 83.6 58 69.0
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 7.2e-15 83.6 63 63.5
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 9.4e-15 83.2 58 69.0
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 9.4e-15 83.2 58 69.0
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 9.4e-15 83.2 58 69.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 1.2e-14 82.8 58 69.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.2e-14 82.8 60 61.7
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 1.6e-14 82.4 58 67.2
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 1.6e-14 82.4 58 69.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.6e-14 82.4 58 67.2
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 1.6e-14 82.4 58 69.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 1.6e-14 82.4 58 67.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 1.6e-14 82.4 58 65.5
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 2.1e-14 82.0 58 69.0
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 2.1e-14 82.0 63 65.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 3.6e-14 81.3 60 68.3
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 3.6e-14 81.3 63 65.1
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 4.7e-14 80.9 58 67.2
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 4.7e-14 80.9 58 67.2
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.7e-14 80.9 58 65.5
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 4.7e-14 80.9 58 65.5
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 6.1e-14 80.5 58 63.8
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 8.0e-14 80.1 58 65.5
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 8.0e-14 80.1 60 65.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 8.0e-14 80.1 58 65.5
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 8.0e-14 80.1 58 65.5
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 8.0e-14 80.1 58 65.5
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.8e-13 79.0 60 58.3
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 1.8e-13 79.0 58 63.8
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 1.8e-13 79.0 58 63.8
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 2.3e-13 78.6 58 65.5
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 2.3e-13 78.6 58 65.5
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 3.0e-13 78.2 57 66.7
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 3.0e-13 78.2 57 66.7
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 3.0e-13 78.2 58 63.8
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 5.2e-13 77.4 58 60.3
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 5.2e-13 77.4 58 62.1
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 8.8e-13 76.6 57 63.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.2e-12 76.3 57 63.2
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 1.2e-12 76.3 58 60.3
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 2.0e-12 75.5 58 65.5
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 2.6e-12 75.1 58 60.3
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.4e-12 74.7 57 64.9
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 4.4e-12 74.3 56 62.5
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 5.7e-12 73.9 57 57.9
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 7.5e-12 73.6 65 55.4
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 1.3e-11 72.8 57 59.6
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 2.8e-11 71.6 58 55.2
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 3.7e-11 71.2 58 55.2
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 4.8e-11 70.9 57 61.4
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 6.3e-11 70.5 58 58.6
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 8.3e-11 70.1 57 57.9
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.1e-10 69.7 58 58.6
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.1e-10 69.7 58 55.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 1.4e-10 69.3 58 56.9
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.4e-10 69.3 65 53.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 1.4e-10 69.3 58 55.2
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 3.1e-10 68.2 58 56.9
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.1e-10 67.8 58 56.9
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 4.1e-10 67.8 58 53.4
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.3e-10 67.4 58 56.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 2.0e-09 65.5 60 48.3
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 2.0e-09 65.5 58 53.4
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 3.5e-09 64.7 58 53.4
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 5.9e-09 63.9 58 53.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 1.3e-08 62.8 60 53.3


User provided reference genes

Program Settings