Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.2e-135 485.7 256 100.0
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 2.9e-47 193.0 294 42.2
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 3.5e-45 186.0 299 39.1
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.6e-43 178.7 289 43.6
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.8e-39 166.0 290 41.4
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 8.4e-39 164.9 287 37.3
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 5.4e-38 162.2 286 41.3
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 3.5e-37 159.5 284 40.5
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.6e-37 159.1 288 41.3
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.3e-36 157.5 290 41.0
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.3e-36 157.5 289 40.1
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 7.4e-35 151.8 289 38.8
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.8e-34 149.1 287 38.3
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 9.0e-33 144.8 293 36.5
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 5.8e-32 142.1 290 37.2
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 9.9e-32 141.4 294 33.7
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-31 140.6 293 41.6
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 3.5e-29 132.9 285 35.1
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 3.0e-28 129.8 270 38.5
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 9.6e-27 124.8 268 37.7
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.5e-24 115.9 288 33.3
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.4e-22 110.9 293 32.8
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 4.2e-22 109.4 291 31.6
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 4.2e-22 109.4 291 33.3
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 6.0e-21 105.5 300 32.7
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.9e-21 105.1 286 30.4
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.1e-19 101.3 283 30.7
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.5e-19 100.9 283 30.7
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.9e-19 100.5 292 30.1
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 5.7e-19 99.0 278 34.5
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 7.4e-19 98.6 265 31.7
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.6e-18 97.4 283 29.3
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 4.8e-18 95.9 287 30.3
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.8e-17 94.0 284 31.3
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 3.1e-17 93.2 262 31.3
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 4.1e-17 92.8 281 30.2
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.3e-17 92.4 277 32.5
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 5.3e-17 92.4 279 29.7
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.5e-16 90.9 274 30.7
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.5e-16 90.9 293 29.0
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.5e-16 90.9 289 31.8
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.0e-16 90.5 281 32.0
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.6e-16 90.1 273 30.8
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 2.6e-16 90.1 278 30.9
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.6e-16 90.1 227 31.7
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 4.5e-16 89.4 278 30.9
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 4.5e-16 89.4 297 29.3
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 5.9e-16 89.0 269 30.1
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.7e-16 88.6 269 31.6
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 7.7e-16 88.6 287 30.7
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.0e-15 88.2 322 29.2
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.0e-15 88.2 290 30.0
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.3e-15 87.8 273 31.5
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.3e-15 87.8 279 29.7
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.9e-15 86.7 294 29.6
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.0e-15 85.9 281 31.0
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 8.5e-15 85.1 281 28.5
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 8.5e-15 85.1 270 29.3
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.1e-14 84.7 282 31.6
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-14 84.7 267 30.0
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.1e-14 84.7 267 30.0
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.1e-14 84.7 278 30.2
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.1e-14 84.7 277 31.8
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 3.2e-14 83.2 304 28.3
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.2e-14 82.8 276 29.7
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.2e-14 82.8 273 27.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 9.4e-14 81.6 282 30.5
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-13 81.3 271 30.3
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.6e-13 80.9 275 30.5
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.1e-13 80.5 285 29.8
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.7e-13 80.1 277 28.9
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 3.6e-13 79.7 275 30.9
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 4.6e-13 79.3 299 31.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 4.6e-13 79.3 269 30.9
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.9e-13 78.6 281 30.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.0e-12 78.2 289 28.0
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 1.0e-12 78.2 296 28.4
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 273 30.4
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.4e-12 77.8 278 30.2
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 2.3e-12 77.0 266 27.8
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.3e-12 77.0 294 28.6
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 5.1e-12 75.9 272 29.8
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 1.1e-11 74.7 265 29.4
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.5e-11 74.3 295 29.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.0e-11 73.9 287 28.2
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.0e-11 73.9 264 29.9
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.3e-11 72.8 278 28.8
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.3e-10 71.2 276 29.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.2e-10 70.5 176 31.2
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.8e-10 70.1 344 26.7
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 3.7e-10 69.7 261 28.4
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.8e-10 69.3 273 27.8
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 6.3e-10 68.9 266 28.2
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 8.2e-10 68.6 248 28.6
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 8.2e-10 68.6 273 28.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.4e-09 67.8 270 29.3
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.4e-09 67.8 284 28.2
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.8e-09 67.4 272 25.7
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 1.8e-09 67.4 306 27.5
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.8e-09 67.4 337 26.4
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.1e-09 66.2 209 26.3
Sopen06g004460 Solanum pennellii HOM05D003500 ORTHO05D003919 5.3e-09 65.9 59 62.7
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.0e-08 63.9 278 25.9
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 3.4e-08 63.2 275 26.5
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.5e-08 62.8 271 28.0
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.5e-08 62.8 302 27.2
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 4.5e-08 62.8 265 26.0
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 4.5e-08 62.8 265 26.0
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 4.5e-08 62.8 263 28.5
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 7.7e-08 62.0 281 26.3
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 7.7e-08 62.0 286 27.6
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.7e-07 60.8 199 28.1
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 2.2e-07 60.5 145 29.7
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.9e-07 60.1 277 25.3
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.9e-07 60.1 276 27.2
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 2.9e-07 60.1 266 28.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 3.8e-07 59.7 298 27.5
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 6.5e-07 58.9 271 28.8
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 6.5e-07 58.9 270 27.0
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 6.5e-07 58.9 281 29.5
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-06 58.2 133 31.6
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.5e-06 57.0 278 27.3
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.5e-06 57.0 282 27.3
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 3.2e-06 56.6 274 27.7
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.2e-06 56.2 274 27.7
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 4.2e-06 56.2 303 26.7
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 5.5e-06 55.8 64 53.1
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 5.5e-06 55.8 312 28.2
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.5e-06 55.8 271 25.8
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 7.2e-06 55.5 191 26.2
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 9.4e-06 55.1 274 27.4


User provided reference genes

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