Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 5.8e-121 437.6 222 100.0
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 4.2e-95 351.7 222 78.8
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 5.5e-95 351.3 222 78.8
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 9.7e-92 340.5 222 77.0
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.3e-91 337.8 222 75.7
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 6.3e-91 337.8 222 78.4
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.0e-89 332.8 222 76.6
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.4e-89 332.0 222 74.8
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 4.5e-89 331.6 202 79.7
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.0e-88 330.5 222 75.7
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.7e-88 329.7 222 76.1
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.7e-88 329.7 222 76.1
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 8.5e-88 327.4 222 75.7
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 2.5e-87 325.9 222 71.2
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.2e-87 325.1 201 79.6
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 1.6e-86 323.2 213 75.1
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 2.7e-86 322.4 222 71.6
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 3.6e-86 322.0 222 73.0
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 4.7e-86 321.6 222 74.8
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.4e-85 320.1 222 74.8
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 2.3e-85 319.3 220 71.8
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 3.0e-85 318.9 213 74.2
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 3.0e-85 318.9 219 73.1
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 3.0e-85 318.9 208 75.5
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 5.1e-85 318.2 215 72.1
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.1e-84 317.0 222 73.4
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.5e-84 316.6 222 74.3
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.0e-84 316.2 215 73.5
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 9.7e-84 313.9 223 69.5
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.2e-83 312.8 213 74.2
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.2e-83 312.8 202 74.3
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.8e-83 311.6 203 75.4
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 8.2e-83 310.8 191 79.6
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 5.3e-82 308.1 224 71.9
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 5.3e-82 308.1 189 76.2
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.2e-81 307.0 223 70.4
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 2.0e-81 306.2 223 71.7
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 5.9e-81 304.7 216 71.3
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 5.9e-81 304.7 219 70.8
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.3e-80 303.5 200 74.0
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.9e-80 302.4 200 73.5
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 3.8e-80 302.0 222 68.5
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 8.5e-80 300.8 200 73.5
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.5e-79 300.1 200 72.5
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.5e-79 300.1 179 81.0
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 4.2e-79 298.5 222 68.0
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 5.5e-79 298.1 201 72.1
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 7.2e-79 297.7 222 68.5
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 9.4e-79 297.4 220 68.6
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.0e-77 293.9 200 72.5
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.4e-77 293.5 202 71.8
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.3e-77 292.7 205 71.2
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.0e-77 292.4 179 77.7
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 4.0e-77 292.0 204 70.6
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 6.7e-77 291.2 212 68.9
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.8e-77 290.8 191 75.4
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 1.5e-76 290.0 192 71.9
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 2.2e-75 286.2 222 65.8
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.8e-75 285.8 200 70.0
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 6.3e-75 284.6 194 71.1
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 6.3e-75 284.6 182 75.3
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 8.2e-75 284.3 200 71.0
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 8.2e-75 284.3 209 67.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 8.2e-75 284.3 197 71.1
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.4e-74 283.5 208 69.2
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 7.0e-74 281.2 209 66.5
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.6e-73 280.0 199 67.3
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 3.5e-73 278.9 211 66.8
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 4.5e-73 278.5 207 69.1
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 5.9e-73 278.1 206 67.0
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 7.7e-73 277.7 195 71.8
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 1.0e-72 277.3 205 67.8
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 2.9e-72 275.8 206 66.5
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 3.8e-72 275.4 196 69.4
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.8e-72 275.4 193 69.4
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 5.0e-72 275.0 193 68.9
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 8.5e-72 274.2 228 64.5
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 2.5e-71 272.7 206 66.5
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 2.5e-71 272.7 203 66.5
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 3.2e-71 272.3 227 62.6
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 4.2e-71 271.9 225 64.0
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 5.5e-71 271.6 187 71.1
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.6e-70 268.9 213 64.3
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 3.6e-70 268.9 306 49.0
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.0e-69 267.3 175 73.7
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 5.2e-69 265.0 170 74.1
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 5.2e-69 265.0 200 65.5
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 8.8e-69 264.2 209 65.1
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-68 263.8 170 74.7
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 1.2e-68 263.8 170 74.7
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 1.5e-68 263.5 170 74.1
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-68 263.1 170 74.1
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-68 263.1 169 74.6
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 2.6e-68 262.7 170 74.1
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 2.6e-68 262.7 170 74.1
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 4.4e-68 261.9 169 74.0
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 5.7e-68 261.5 170 73.5
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 7.5e-68 261.2 170 73.5
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 1.3e-67 260.4 209 64.6
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.2e-67 259.6 174 72.4
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 3.7e-67 258.8 170 73.5
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 3.7e-67 258.8 170 73.5
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 3.7e-67 258.8 170 73.5
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 1.1e-66 257.3 202 64.4
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.4e-66 256.9 242 57.0
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 4.1e-66 255.4 213 61.0
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.6e-65 253.4 177 68.9
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 1.3e-64 250.4 206 63.1
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 2.9e-64 249.2 241 56.4
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 6.5e-64 248.1 193 63.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 9.5e-63 244.2 243 55.1
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 8.0e-62 241.1 190 67.4
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.0e-61 240.7 177 66.1
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 8.8e-61 237.7 221 57.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 1.2e-60 237.3 221 57.0
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 3.4e-60 235.7 286 46.5
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 4.4e-60 235.3 143 81.1
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.7e-59 233.4 221 56.1
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.8e-58 229.9 157 75.8
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 4.1e-58 228.8 155 74.2
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 9.5e-55 217.6 172 67.4
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 5.2e-53 211.8 135 75.6
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 4.4e-52 208.8 174 59.2
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 9.8e-52 207.6 192 54.2
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 4.9e-51 205.3 141 67.4
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.1e-50 204.1 156 68.6
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 5.9e-49 198.4 141 70.9
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.4e-44 182.2 137 65.7
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.1e-42 177.6 182 56.0
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.3e-40 169.9 160 57.5
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 3.0e-40 169.5 168 57.1
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 5.8e-36 155.2 162 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.9e-35 152.9 131 56.5
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.7e-35 152.5 105 63.8
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 5.4e-34 148.7 113 59.3
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 1.7e-32 143.7 94 74.5
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 3.0e-32 142.9 92 75.0
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 1.5e-28 130.6 103 68.0
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-28 130.2 115 59.1
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-28 130.2 115 59.1
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 5.1e-24 115.5 72 73.6
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 1.3e-19 100.9 90 55.6
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.6e-17 94.0 67 64.2
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 3.0e-16 89.7 76 56.6
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 3.0e-16 89.7 64 67.2
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.2e-11 73.6 149 34.9
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 6.4e-11 72.0 54 59.3
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 7.1e-10 68.6 48 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 2.1e-09 67.0 46 58.7


User provided reference genes

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