Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 7.8e-97 357.1 172 100.0
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 2.8e-78 295.4 161 86.3
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 6.2e-78 294.3 161 85.7
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 1.8e-77 292.7 161 85.1
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 2.3e-77 292.4 161 85.7
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 3.1e-77 292.0 164 84.8
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 6.8e-77 290.8 161 85.7
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 8.9e-77 290.4 161 83.2
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 8.9e-77 290.4 164 84.1
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.2e-76 290.0 161 84.5
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.0e-76 289.3 161 83.9
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 5.8e-76 287.7 161 84.5
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 9.8e-76 287.0 162 84.6
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 1.3e-75 286.6 161 83.9
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 1.7e-75 286.2 162 85.2
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 2.2e-75 285.8 161 83.2
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.9e-75 285.4 161 83.9
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 2.9e-75 285.4 161 83.9
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 2.9e-75 285.4 172 80.2
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 3.7e-75 285.0 161 84.5
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 3.7e-75 285.0 162 83.3
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 3.7e-75 285.0 161 83.2
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 3.7e-75 285.0 161 85.1
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 4.9e-75 284.6 161 82.6
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 8.3e-75 283.9 161 85.1
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.4e-74 283.1 161 83.9
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 1.4e-74 283.1 172 80.8
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 1.9e-74 282.7 170 80.0
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 3.2e-74 282.0 161 81.4
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 5.4e-74 281.2 172 79.7
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 1.2e-73 280.0 161 82.6
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 1.6e-73 279.6 161 82.6
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 2.7e-73 278.9 162 82.7
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 2.7e-73 278.9 161 81.4
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 2.7e-73 278.9 170 81.8
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 2.7e-73 278.9 172 79.1
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 3.5e-73 278.5 161 81.4
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 6.0e-73 277.7 161 81.4
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 7.8e-73 277.3 161 79.5
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 7.8e-73 277.3 155 83.9
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 7.8e-73 277.3 161 80.7
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 7.8e-73 277.3 161 82.0
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.0e-72 276.9 162 81.5
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 1.0e-72 276.9 161 81.4
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 1.3e-72 276.6 161 80.7
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.3e-72 276.6 164 79.3
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 1.7e-72 276.2 170 80.0
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 3.0e-72 275.4 162 80.9
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 3.0e-72 275.4 170 77.1
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 3.9e-72 275.0 170 79.4
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 3.9e-72 275.0 161 80.1
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 3.9e-72 275.0 162 80.2
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 5.1e-72 274.6 155 83.9
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 6.6e-72 274.2 158 81.0
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 1.1e-71 273.5 160 81.9
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 1.5e-71 273.1 165 80.6
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 1.9e-71 272.7 153 83.7
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 2.5e-71 272.3 168 79.2
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 3.3e-71 271.9 164 78.7
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 4.3e-71 271.6 161 80.1
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 5.6e-71 271.2 165 80.6
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 7.3e-71 270.8 167 79.6
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 9.5e-71 270.4 153 83.7
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 2.8e-70 268.9 161 80.1
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 2.8e-70 268.9 171 78.4
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 2.8e-70 268.9 158 81.0
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 3.6e-70 268.5 164 78.7
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 4.7e-70 268.1 171 78.4
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 1.1e-69 266.9 167 78.4
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 1.4e-69 266.5 173 76.9
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 1.4e-69 266.5 173 76.3
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 1.4e-69 266.5 161 78.9
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 1.4e-69 266.5 155 80.6
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 1.8e-69 266.2 161 78.9
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 1.8e-69 266.2 161 78.3
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 4.0e-69 265.0 168 76.8
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 5.2e-69 264.6 151 81.5
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 6.8e-69 264.2 162 78.4
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 8.9e-69 263.8 161 78.3
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 1.5e-68 263.1 168 75.0
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 3.4e-68 261.9 170 75.3
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 3.4e-68 261.9 161 77.0
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 7.6e-68 260.8 161 77.0
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 7.6e-68 260.8 161 77.0
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 7.6e-68 260.8 161 76.4
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 7.6e-68 260.8 188 70.2
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 3.8e-67 258.5 161 75.2
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 3.8e-67 258.5 161 75.2
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.8e-67 258.5 161 78.3
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 4.9e-67 258.1 172 75.0
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 6.4e-67 257.7 171 71.9
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 1.1e-66 256.9 161 75.8
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 2.4e-66 255.8 169 71.0
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 2.1e-65 252.7 164 74.4
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 3.5e-65 251.9 170 74.7
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 1.7e-64 249.6 171 70.2
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.3e-64 249.2 151 78.1
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 3.9e-64 248.4 168 72.0
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 5.1e-64 248.1 151 77.5
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 5.1e-64 248.1 157 76.4
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 6.6e-64 247.7 161 75.2
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 4.3e-63 245.0 151 76.8
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 5.6e-63 244.6 166 71.1
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 3.6e-62 241.9 139 80.6
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 3.6e-62 241.9 139 80.6
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 9.9e-60 233.8 150 72.7
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 9.9e-60 233.8 189 62.4
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 9.3e-58 227.3 162 72.2
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.6e-57 226.5 142 79.6
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 2.1e-57 226.1 157 70.1
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.5e-55 219.2 154 68.2
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 2.5e-55 219.2 141 74.5
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 3.3e-55 218.8 155 66.5
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 5.6e-55 218.0 180 62.2
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 7.3e-55 217.6 318 43.4
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 3.6e-54 215.3 134 79.1
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 9.9e-52 207.2 117 81.2
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.5e-47 193.4 113 79.6
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 2.6e-44 182.6 166 59.0
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 8.7e-40 167.5 299 37.8
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 1.3e-35 153.7 202 45.0
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 1.3e-35 153.7 213 44.1
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.4e-26 123.6 84 73.8
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.2e-25 120.6 70 74.3
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 6.1e-25 118.2 72 73.6
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 3.0e-24 115.9 66 83.3
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 1.1e-21 107.5 80 61.2
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 3.3e-15 85.9 45 80.0
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 1.2e-12 77.4 62 54.8
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 8.5e-11 71.2 81 50.6
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.9e-10 70.1 88 43.2
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.4e-08 63.9 116 35.3
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 3.3e-07 59.3 82 43.9


User provided reference genes

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