Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 2.5e-57 225.3 121 100.0
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 3.6e-24 115.2 99 63.6
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 3.6e-24 115.2 96 59.4
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 4.0e-23 111.7 93 60.2
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 3.4e-22 108.6 93 58.1
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 4.4e-22 108.2 95 58.9
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 1.3e-21 106.7 95 58.9
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 2.2e-21 105.9 95 60.0
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 2.2e-21 105.9 103 53.4
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 6.4e-21 104.4 94 59.6
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 1.1e-20 103.6 94 58.5
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 3.2e-20 102.1 78 57.7
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 4.1e-20 101.7 94 55.3
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 4.1e-20 101.7 92 54.3
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 4.1e-20 101.7 95 57.9
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 7.0e-20 100.9 95 56.8
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.2e-19 100.1 77 64.9
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 1.6e-19 99.8 98 54.1
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.6e-19 99.8 99 55.6
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 2.0e-19 99.4 95 53.7
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 2.0e-19 99.4 77 67.5
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.0e-18 97.1 98 52.0
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 1.7e-18 96.3 93 53.8
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.3e-18 95.9 96 54.2
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 2.3e-18 95.9 96 54.2
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 2.3e-18 95.9 95 52.6
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 1.1e-17 93.6 95 51.6
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.5e-17 93.2 73 63.0
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.5e-17 93.2 73 63.0
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.9e-17 92.8 99 48.5
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 1.9e-17 92.8 100 48.0
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 2.5e-17 92.4 91 48.4
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 2.5e-17 92.4 91 48.4
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 2.5e-17 92.4 100 53.0
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.5e-17 92.4 95 56.8
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 3.3e-17 92.0 103 47.6
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 3.3e-17 92.0 94 54.3
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 3.3e-17 92.0 90 54.4
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 3.3e-17 92.0 85 54.1
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 4.3e-17 91.7 95 51.6
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 5.6e-17 91.3 85 52.9
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 5.6e-17 91.3 81 51.9
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 9.5e-17 90.5 100 51.0
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 9.5e-17 90.5 89 53.9
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 1.2e-16 90.1 99 47.5
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.2e-16 90.1 95 48.4
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.6e-16 89.7 100 46.0
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 2.1e-16 89.4 101 49.5
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 2.1e-16 89.4 95 48.4
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 2.8e-16 89.0 86 53.5
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 3.6e-16 88.6 92 46.7
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 6.2e-16 87.8 100 49.0
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 8.1e-16 87.4 79 53.2
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 8.1e-16 87.4 99 51.5
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 1.1e-15 87.0 87 50.6
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.8e-15 86.3 99 45.5
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.8e-15 86.3 87 49.4
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 2.3e-15 85.9 89 47.2
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 5.2e-15 84.7 67 59.7
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 5.2e-15 84.7 67 59.7
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 5.2e-15 84.7 96 51.0
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 5.2e-15 84.7 72 55.6
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 1.2e-14 83.6 78 53.8
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 2.0e-14 82.8 69 58.0
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 3.4e-14 82.0 75 50.7
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 4.4e-14 81.6 74 52.7
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 5.8e-14 81.3 66 57.6
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 5.8e-14 81.3 78 47.4
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 5.8e-14 81.3 123 41.5
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 7.5e-14 80.9 68 52.9
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 7.5e-14 80.9 64 59.4
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 7.5e-14 80.9 84 47.6
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 9.8e-14 80.5 96 50.0
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 1.7e-13 79.7 57 61.4
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 3.7e-13 78.6 99 47.5
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 3.7e-13 78.6 75 48.0
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 6.4e-13 77.8 73 49.3
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.4e-12 76.6 74 47.3
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.9e-12 76.3 87 42.5
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 7.1e-12 74.3 94 43.6
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 1.2e-11 73.6 65 53.8
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 7.8e-11 70.9 92 40.2
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.3e-10 70.1 105 40.0
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.3e-10 70.1 53 60.4
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 2.3e-10 69.3 79 44.3
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.1e-09 67.0 74 48.6
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.5e-09 65.9 58 53.4
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 7.3e-09 64.3 65 55.4
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 6.2e-08 61.2 84 41.7
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 1.4e-07 60.1 95 33.7
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 9.9e-06 53.9 53 47.2


User provided reference genes

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